Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001001890 18 1935 NP_001745 18 1935 XP_005261126 18 1935 XP_005261125 18 1935 NP_065386 17 3301 XP_005268986 17 3301 NP_776253 17 4312 NP_115524 17 4312 NP_001008487 17 4312 NP_001008485 17 4312 NP_060306 17 4312 NP_001157947 17 4312 XP_005269237 17 4312 XP_005269236 17 4312 XP_005269235 17 4312 XP_006719693 17 4312 XP_005269233 17 4312 XP_005247622 17 4312 XP_005247621 17 4312 XP_006713744 17 4312 XP_005247620 17 4312 XP_005247619 17 4312 XP_005247618 17 4312 XP_005247617 17 4312 XP_005247616 17 4312 XP_005245126 17 4312 XP_006720690 16 5631 NP_116116 16 7355 NP_057520 16 7355 NP_776175 16 7355 XP_005254368 16 7355 XP_005254367 16 7355 XP_006720536 16 7355 XP_006726466 15 9605 XP_006720284 15 9605 XP_005267978 15 9605 XP_005267977 15 9605 XP_005267976 15 9605 XP_006712969 15 9605 XP_006710208 15 9605 NP_001153003 15 9605 NP_065887 15 9605>NP_001001890 Length = 453 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 LSSRLSTA Sbjct: 290 LSSRLSTA 297>NP_001745 Length = 480 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 LSSRLSTA Sbjct: 317 LSSRLSTA 324>XP_005261126 Length = 416 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 LSSRLSTA Sbjct: 253 LSSRLSTA 260>XP_005261125 Length = 468 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 LSSRLSTA Sbjct: 305 LSSRLSTA 312>NP_065386 Length = 179 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 RLSSRLST 8 RLS+RLST Sbjct: 124 RLSNRLST 131>XP_005268986 Length = 179 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 RLSSRLST 8 RLS+RLST Sbjct: 124 RLSNRLST 131>NP_776253 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 153 LASRLSTA 160>NP_115524 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>NP_001008487 Length = 461 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 94 LASRLSTA 101>NP_001008485 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>NP_060306 Length = 487 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>NP_001157947 Length = 370 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 3 LASRLSTA 10>XP_005269237 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269236 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269235 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_006719693 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269233 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005247622 Length = 481 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 94 LASRLSTA 101>XP_005247621 Length = 502 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_006713744 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247620 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247619 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247618 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247617 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247616 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005245126 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 L+SRLSTA Sbjct: 153 LASRLSTA 160>XP_006720690 Length = 1245 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLSTA 9 LSSRLS+A Sbjct: 1173 LSSRLSSA 1180>NP_116116 Length = 499 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RLSSRLSTA 9 RLS+RLS A Sbjct: 24 RLSARLSGA 32>NP_057520 Length = 1012 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLSSRLST 8 R SSRLST Sbjct: 326 RRSSRLST 333>NP_776175 Length = 1150 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLSSRLST 8 RLS RLST Sbjct: 553 RLSFRLST 560>XP_005254368 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLSSRLST 8 RLS RLST Sbjct: 553 RLSFRLST 560>XP_005254367 Length = 1031 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLSSRLST 8 RLS RLST Sbjct: 434 RLSFRLST 441>XP_006720536 Length = 1072 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLSSRLST 8 RLS RLST Sbjct: 475 RLSFRLST 482>XP_006726466 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 1002 LSSRLSEA 1009>XP_006720284 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 180 LSSRLSDA 187>XP_005267978 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 195 LSSRLSDA 202>XP_005267977 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 207 LSSRLSDA 214>XP_005267976 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 208 LSSRLSDA 215>XP_006712969 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 1002 LSSRLSEA 1009>XP_006710208 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 358 LSSRLSEA 365>NP_001153003 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 195 LSSRLSDA 202>NP_065887 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSSRLSTA 9 LSSRLS A Sbjct: 195 LSSRLSDA 202Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.113 0.250 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 207,667 Number of extensions: 247 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |