Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 20 299 NP_000811 18 1935 NP_001034568 17 3301 XP_005268301 17 3301 XP_006720407 17 3301 NP_001120652 16 5631 NP_000251 16 5631 NP_001158268 16 5631 NP_579875 16 5631 NP_758847 16 5631 NP_003080 16 5631 NP_775742 16 5631 XP_005259234 16 5631 XP_006718624 16 5631 XP_005274069 16 5631 XP_006718623 16 5631 XP_006718622 16 5631 XP_006718621 16 5631 XP_006713021 16 5631 XP_006713020 16 5631 XP_006713019 16 5631 NP_694972 16 7355 NP_003226 16 7355 NP_001180473 16 7355 NP_001146 16 7355 XP_005251100 16 7355 XP_006716686 16 7355 XP_005251099 16 7355 XP_005251097 16 7355 XP_005251095 16 7355 XP_006716685 16 7355 XP_005268489 16 7355 NP_001166169 15 9605 NP_573570 15 9605 NP_001907 15 9605 NP_001166170 15 9605 NP_689716 15 9605 NP_998797 15 9605 NP_998796 15 9605 XP_005268429 15 9605>NP_004251 Length = 1208 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLRRTFQVF 9 RLRRTFQ F Sbjct: 1069 RLRRTFQAF 1077>NP_000811 Length = 678 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RLRRTFQVF 9 R RR FQVF Sbjct: 45 RQRRAFQVF 53>NP_001034568 Length = 823 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RRTFQVF 9 R+TFQVF Sbjct: 238 RQTFQVF 244>XP_005268301 Length = 662 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RRTFQVF 9 R+TFQVF Sbjct: 77 RQTFQVF 83>XP_006720407 Length = 813 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RRTFQVF 9 R+TFQVF Sbjct: 228 RQTFQVF 234>NP_001120652 Length = 2175 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>NP_000251 Length = 2215 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>NP_001158268 Length = 186 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RTFQVF 9 RTFQ+F Sbjct: 35 RTFQIF 40>NP_579875 Length = 436 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLRRTFQ 7 R+RRTF+ Sbjct: 156 RMRRTFE 162>NP_758847 Length = 425 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLRRTFQ 7 R+RRTF+ Sbjct: 156 RMRRTFE 162>NP_003080 Length = 437 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLRRTFQVF 9 +LRR F+V+ Sbjct: 118 KLRREFEVY 126>NP_775742 Length = 274 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RTFQVF 9 RTFQ+F Sbjct: 123 RTFQIF 128>XP_005259234 Length = 428 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLRRTFQVF 9 +LRR F+V+ Sbjct: 118 KLRREFEVY 126>XP_006718624 Length = 2177 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>XP_005274069 Length = 2176 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>XP_006718623 Length = 2189 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>XP_006718622 Length = 2190 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>XP_006718621 Length = 2225 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLRRTF 6 RLRRTF Sbjct: 1230 RLRRTF 1235>XP_006713021 Length = 161 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RTFQVF 9 RTFQ+F Sbjct: 123 RTFQIF 128>XP_006713020 Length = 174 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RTFQVF 9 RTFQ+F Sbjct: 123 RTFQIF 128>XP_006713019 Length = 259 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RTFQVF 9 RTFQ+F Sbjct: 123 RTFQIF 128>NP_694972 Length = 1330 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RLRRTFQVF 9 RLR+ +++F Sbjct: 93 RLRKEYEIF 101>NP_003226 Length = 2768 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>NP_001180473 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LRRTFQVF 9 LRR FQ F Sbjct: 527 LRRVFQEF 534>NP_001146 Length = 673 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LRRTFQVF 9 LRR FQ F Sbjct: 559 LRRVFQEF 566>XP_005251100 Length = 2103 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_006716686 Length = 2111 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_005251099 Length = 2121 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_005251097 Length = 2178 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_005251095 Length = 2704 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_006716685 Length = 2747 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L +TFQVF Sbjct: 1313 LLQTFQVF 1320>XP_005268489 Length = 667 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LRRTFQVF 9 LRR FQ F Sbjct: 553 LRRVFQEF 560>NP_001166169 Length = 984 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L+R F+VF Sbjct: 879 LKRRFEVF 886>NP_573570 Length = 1023 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L+R F+VF Sbjct: 918 LKRRFEVF 925>NP_001907 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 +RR FQV+ Sbjct: 110 IRRGFQVY 117>NP_001166170 Length = 959 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L+R F+VF Sbjct: 854 LKRRFEVF 861>NP_689716 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RRTFQVF 9 R+TFQ F Sbjct: 305 RQTFQAF 311>NP_998797 Length = 573 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RRTFQVF 9 R+TFQ F Sbjct: 305 RQTFQAF 311>NP_998796 Length = 608 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RRTFQVF 9 R+TFQ F Sbjct: 305 RQTFQAF 311>XP_005268429 Length = 1002 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRRTFQVF 9 L+R F+VF Sbjct: 897 LKRRFEVF 904Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.361 0.159 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,309 Number of extensions: 743 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |