Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001035228 16 5631 NP_058647 16 5631 NP_857592 16 5631 NP_003050 16 5631 NP_001191028 16 5631 XP_006714738 16 5631 NP_003473 16 7355 NP_001243040 16 7355 NP_001243035 16 7355 NP_004249 16 7355 NP_001243038 16 7355 XP_006719679 16 7355 XP_005269219 16 7355 XP_006719678 16 7355 XP_006719677 16 7355 NP_071393 16 7355 NP_076983 16 7355 NP_061978 15 9605 NP_002891 15 9605 NP_085153 15 9605 XP_006726671 15 9605 XP_005246935 15 9605 XP_006712846 15 9605>NP_001035228 Length = 113 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LRLALTV 8 LRLALTV Sbjct: 24 LRLALTV 30>NP_058647 Length = 152 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LRLALTV 8 LRLALTV Sbjct: 24 LRLALTV 30>NP_857592 Length = 120 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LRLALTV 8 LRLALTV Sbjct: 24 LRLALTV 30>NP_003050 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LRLALTVP 9 L LALTVP Sbjct: 259 LLLALTVP 266>NP_001191028 Length = 168 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LRLALTV 8 LRLALTV Sbjct: 24 LRLALTV 30>XP_006714738 Length = 375 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LRLALTVP 9 L LALTVP Sbjct: 83 LLLALTVP 90>NP_003473 Length = 5537 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLRLALTV 8 RLRL LT+ Sbjct: 4989 RLRLLLTI 4996>NP_001243040 Length = 959 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRLALTVP 9 LR+A+T+P Sbjct: 603 LRIAVTLP 610>NP_001243035 Length = 1021 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRLALTVP 9 LR+A+T+P Sbjct: 665 LRIAVTLP 672>NP_004249 Length = 1021 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRLALTVP 9 LR+A+T+P Sbjct: 665 LRIAVTLP 672>NP_001243038 Length = 1021 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LRLALTVP 9 LR+A+T+P Sbjct: 665 LRIAVTLP 672>XP_006719679 Length = 5536 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLRLALTV 8 RLRL LT+ Sbjct: 4988 RLRLLLTI 4995>XP_005269219 Length = 5537 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLRLALTV 8 RLRL LT+ Sbjct: 4989 RLRLLLTI 4996>XP_006719678 Length = 5539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLRLALTV 8 RLRL LT+ Sbjct: 4991 RLRLLLTI 4998>XP_006719677 Length = 5540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLRLALTV 8 RLRL LT+ Sbjct: 4992 RLRLLLTI 4999>NP_071393 Length = 349 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRLALTVP 9 LRL LT+P Sbjct: 237 LRLLLTLP 244>NP_076983 Length = 516 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RLALTVP 9 RLALT P Sbjct: 374 RLALTAP 380>NP_061978 Length = 4242 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRLALTVP 9 LRL+ TVP Sbjct: 1690 LRLSWTVP 1697>NP_002891 Length = 1247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LALTVP 9 LALTVP Sbjct: 589 LALTVP 594>NP_085153 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLALTVP 9 RLA+T+P Sbjct: 73 RLAMTLP 79>XP_006726671 Length = 353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRLALTVP 9 +RL+LT P Sbjct: 248 IRLSLTAP 255>XP_005246935 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLALTVP 9 RLA+T+P Sbjct: 73 RLAMTLP 79>XP_006712846 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLALTVP 9 RLA+T+P Sbjct: 73 RLAMTLP 79Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.148 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 363,945 Number of extensions: 535 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |