Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_653165 17 4312 NP_000129 16 5631 NP_001136336 16 5631 XP_006721417 16 5631 XP_006721416 16 5631 NP_003943 16 7355 XP_006721609 16 7355 XP_005274221 16 7355 XP_005246247 16 7355 NP_036525 16 7355 NP_116179 15 9605 NP_060521 15 9605 NP_055529 15 9605 NP_001013712 15 9605 XP_006721055 15 9605 XP_006721054 15 9605 XP_006721053 15 9605 XP_006721052 15 9605 XP_005268927 15 9605 XP_005249607 15 9605 XP_005249606 15 9605 XP_006716104 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLELAFAF 9 LLELAFAF Sbjct: 1514 LLELAFAF 1521>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLELAFAF 9 LLELAFAF Sbjct: 1514 LLELAFAF 1521>NP_653165 Length = 314 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 RLL LAFA Sbjct: 169 RLLSLAFA 176>NP_000129 Length = 2871 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RLLELAFAF 9 RLLE+A F Sbjct: 5 RLLEIALGF 13>NP_001136336 Length = 2521 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RLLELAFAF 9 RLLELA F Sbjct: 787 RLLELAAGF 795>XP_006721417 Length = 2497 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RLLELAFAF 9 RLLELA F Sbjct: 787 RLLELAAGF 795>XP_006721416 Length = 2504 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RLLELAFAF 9 RLLELA F Sbjct: 770 RLLELAAGF 778>NP_003943 Length = 482 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLELAFAF 9 ++ELA+AF Sbjct: 131 IVELAYAF 138>XP_006721609 Length = 947 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLELAFA 8 LLE+AFA Sbjct: 919 LLEMAFA 925>XP_005274221 Length = 385 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLELAFAF 9 ++ELA+AF Sbjct: 34 IVELAYAF 41>XP_005246247 Length = 1417 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RLLELAF 7 RLL+LAF Sbjct: 1388 RLLDLAF 1394>NP_036525 Length = 1338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLELAFA 8 LLE+AFA Sbjct: 919 LLEMAFA 925>NP_116179 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLLELAFAF 9 R +ELA+AF Sbjct: 170 RHIELAWAF 178>NP_060521 Length = 1066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLLELAFAF 9 RL++L F+F Sbjct: 495 RLIDLDFSF 503>NP_055529 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 + LELAFA Sbjct: 1096 KALELAFA 1103>NP_001013712 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 RLL+ AFA Sbjct: 471 RLLQAAFA 478>XP_006721055 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 + LELAFA Sbjct: 307 KALELAFA 314>XP_006721054 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 + LELAFA Sbjct: 1096 KALELAFA 1103>XP_006721053 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 + LELAFA Sbjct: 1096 KALELAFA 1103>XP_006721052 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 + LELAFA Sbjct: 1096 KALELAFA 1103>XP_005268927 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLLELAFA 8 RLL+ AFA Sbjct: 471 RLLQAAFA 478>XP_005249607 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLLELAFAF 9 RL++L F+F Sbjct: 8 RLIDLDFSF 16>XP_005249606 Length = 878 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLLELAFAF 9 RL++L F+F Sbjct: 307 RLIDLDFSF 315>XP_006716104 Length = 1069 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLLELAFAF 9 RL++L F+F Sbjct: 498 RLIDLDFSF 506Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.353 0.159 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 361,390 Number of extensions: 458 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |