Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002040 18 1482 NP_058644 16 7355 NP_116020 16 7355 XP_006721256 16 7355 NP_001001520 16 7355 NP_005493 15 9605 NP_899229 15 9605 NP_005119 15 9605 XP_006724131 15 9605 XP_005251837 15 9605 XP_005251835 15 9605 XP_006717058 15 9605 XP_005251833 15 9605 XP_005251831 15 9605 XP_005251830 15 9605 XP_005246847 15 9605 XP_006712769 15 9605 XP_006712768 15 9605 XP_006712767 15 9605 XP_006712766 15 9605 XP_005246846 15 9605 NP_005061 15 9605 NP_004875 15 9605 NP_963868 15 9605>NP_002040 Length = 413 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RLIVSKRA 8 RLIVSKRA Sbjct: 247 RLIVSKRA 254>NP_058644 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLIVSKRA 8 RL+V KRA Sbjct: 89 RLLVQKRA 96>NP_116020 Length = 670 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLIVSKRAR 9 ++ VSKRAR Sbjct: 163 KMSVSKRAR 171>XP_006721256 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLIVSKRA 8 RL+V KRA Sbjct: 85 RLLVQKRA 92>NP_001001520 Length = 671 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLIVSKRAR 9 ++ VSKRAR Sbjct: 163 KMSVSKRAR 171>NP_005493 Length = 2261 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1336 RLLIARRSR 1344>NP_899229 Length = 231 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RLIVSKR 7 RLIVS+R Sbjct: 26 RLIVSRR 32>NP_005119 Length = 2298 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLIVSKR 7 RL++SKR Sbjct: 60 RLLISKR 66>XP_006724131 Length = 2298 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLIVSKR 7 RL++SKR Sbjct: 60 RLLISKR 66>XP_005251837 Length = 1659 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1338 RLLIARRSR 1346>XP_005251835 Length = 2074 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1338 RLLIARRSR 1346>XP_006717058 Length = 2100 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1338 RLLIARRSR 1346>XP_005251833 Length = 2203 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1278 RLLIARRSR 1286>XP_005251831 Length = 2263 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1338 RLLIARRSR 1346>XP_005251830 Length = 2263 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 RLIVSKRAR 9 RL++++R+R Sbjct: 1338 RLLIARRSR 1346>XP_005246847 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 811 LIVSQKAR 818>XP_006712769 Length = 1059 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 836 LIVSQKAR 843>XP_006712768 Length = 1150 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 927 LIVSQKAR 934>XP_006712767 Length = 1150 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 927 LIVSQKAR 934>XP_006712766 Length = 1179 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 956 LIVSQKAR 963>XP_005246846 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 1036 LIVSQKAR 1043>NP_005061 Length = 1232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 1009 LIVSQKAR 1016>NP_004875 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 L+VS++AR Sbjct: 125 LVVSRKAR 132>NP_963868 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LIVSKRAR 9 LIVS++AR Sbjct: 1036 LIVSQKAR 1043Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.142 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 297,829 Number of extensions: 322 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |