Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 17 3301 NP_001263689 17 3301 NP_001119584 17 3301 NP_001119586 17 3301 NP_001263625 17 3301 NP_001119590 17 3301 NP_001263690 17 3301 NP_001119585 17 3301 NP_001263624 17 3301 NP_001119588 17 3301 NP_001119587 17 3301 NP_001119589 17 3301 NP_001263627 17 3301 NP_001263628 17 3301 NP_001263626 17 3301 XP_005276382 17 4312 XP_006725162 17 4312 XP_005251181 17 4312 XP_005276079 17 4312 NP_775924 16 5631 NP_112208 16 7355 NP_062873 15 9605 NP_062874 15 9605 NP_000863 15 9605>NP_000537 Length = 393 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 249 RPILTIITL 257>NP_001263689 Length = 354 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 210 RPILTIITL 218>NP_001119584 Length = 393 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 249 RPILTIITL 257>NP_001119586 Length = 341 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 249 RPILTIITL 257>NP_001263625 Length = 302 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 210 RPILTIITL 218>NP_001119590 Length = 354 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 210 RPILTIITL 218>NP_001263690 Length = 354 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 210 RPILTIITL 218>NP_001119585 Length = 346 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 249 RPILTIITL 257>NP_001263624 Length = 307 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 210 RPILTIITL 218>NP_001119588 Length = 209 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 117 RPILTIITL 125>NP_001119587 Length = 261 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 117 RPILTIITL 125>NP_001119589 Length = 214 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 117 RPILTIITL 125>NP_001263627 Length = 182 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 90 RPILTIITL 98>NP_001263628 Length = 187 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 90 RPILTIITL 98>NP_001263626 Length = 234 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 R ILTIITL Sbjct: 90 RPILTIITL 98>XP_005276382 Length = 138 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 RL+LT+ TL Sbjct: 3 RLVLTLCTL 11>XP_006725162 Length = 138 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 RL+LT+ TL Sbjct: 3 RLVLTLCTL 11>XP_005251181 Length = 138 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 RL+LT+ TL Sbjct: 3 RLVLTLCTL 11>XP_005276079 Length = 138 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLILTIITL 9 RL+LT+ TL Sbjct: 3 RLVLTLCTL 11>NP_775924 Length = 645 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LILTIITL 9 LILTI+T+ Sbjct: 31 LILTILTI 38>NP_112208 Length = 321 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LILTIITL 9 LI+TIIT+ Sbjct: 42 LIITIITV 49>NP_062873 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ILTIITL 9 ILT+ITL Sbjct: 87 ILTLITL 93>NP_062874 Length = 432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ILTIITL 9 ILT+ITL Sbjct: 87 ILTLITL 93>NP_000863 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ILTIITL 9 ILT+ITL Sbjct: 87 ILTLITL 93Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.351 0.166 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,510 Number of extensions: 546 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |