Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001096080 16 5631 NP_443135 16 5631 XP_006725237 16 5631 XP_005272597 16 5631 XP_005265906 16 7355 XP_006714896 16 7355 NP_079429 16 7355 NP_997293 15 9605>NP_001096080 Length = 1024 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLFLIMIKL 9 R+FL+ +KL Sbjct: 882 RMFLLRVKL 890>NP_443135 Length = 1024 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLFLIMIKL 9 R+FL+ +KL Sbjct: 882 RMFLLRVKL 890>XP_006725237 Length = 878 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLFLIMIKL 9 R+FL+ +KL Sbjct: 736 RMFLLRVKL 744>XP_005272597 Length = 1025 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLFLIMIKL 9 R+FL+ +KL Sbjct: 883 RMFLLRVKL 891>XP_005265906 Length = 1421 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFLIMIK 8 LF+IMIK Sbjct: 86 LFVIMIK 92>XP_006714896 Length = 1461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFLIMIK 8 LF+IMIK Sbjct: 126 LFVIMIK 132>NP_079429 Length = 1461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LFLIMIK 8 LF+IMIK Sbjct: 126 LFVIMIK 132>NP_997293 Length = 394 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LFLIMIKL 9 L L+M+KL Sbjct: 366 LLLVMVKL 373Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.366 0.178 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 270,453 Number of extensions: 207 Number of successful extensions: 8 Number of sequences better than 10000.0: 8 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 8 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |