Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000360 20 509 XP_005268094 20 509 NP_000224 18 1135 XP_005264366 18 1135 XP_006712078 18 1135 NP_001139114 17 4312 NP_055502 17 4312 NP_001182371 17 4312 NP_059988 17 4312 XP_006713894 17 4312 XP_006713893 17 4312 XP_006713892 17 4312 XP_005269431 17 4312 XP_006713891 17 4312 XP_006713890 17 4312 NP_001153115 16 5631 NP_060819 16 5631 XP_005255016 16 5631 XP_005255015 16 5631 XP_005255014 16 5631 XP_006720666 16 5631 XP_006720665 16 5631 XP_005255012 16 5631 NP_054799 16 7355 NP_001193770 16 7355 NP_149035 16 7355 NP_001015055 16 7355 XP_005254478 16 7355 XP_005264536 16 7355 XP_005264535 16 7355 NP_116256 15 9605 XP_005254442 15 9605 XP_005253235 15 9605 NP_002364 15 9605>NP_000360 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RLDQKIRLR 9 RLD+KIRLR Sbjct: 528 RLDRKIRLR 536>XP_005268094 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RLDQKIRLR 9 RLD+KIRLR Sbjct: 528 RLDRKIRLR 536>NP_000224 Length = 699 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+RLR Sbjct: 474 LDQKLRLR 481>XP_005264366 Length = 380 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+RLR Sbjct: 155 LDQKLRLR 162>XP_006712078 Length = 389 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+RLR Sbjct: 164 LDQKLRLR 171>NP_001139114 Length = 927 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 490 LKQKIRLR 497>NP_055502 Length = 972 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 535 LKQKIRLR 542>NP_001182371 Length = 89 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RLDQKIRLR 9 RL+ K+RLR Sbjct: 68 RLETKLRLR 76>NP_059988 Length = 368 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LDQKIRL 8 LDQK+RL Sbjct: 264 LDQKLRL 270>XP_006713894 Length = 845 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 383 LKQKIRLR 390>XP_006713893 Length = 845 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 383 LKQKIRLR 390>XP_006713892 Length = 952 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 490 LKQKIRLR 497>XP_005269431 Length = 987 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 550 LKQKIRLR 557>XP_006713891 Length = 997 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 535 LKQKIRLR 542>XP_006713890 Length = 1012 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 L QKIRLR Sbjct: 550 LKQKIRLR 557>NP_001153115 Length = 823 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>NP_060819 Length = 878 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_005255016 Length = 695 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_005255015 Length = 823 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_005255014 Length = 837 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_006720666 Length = 878 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_006720665 Length = 878 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>XP_005255012 Length = 878 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDQKIRLR 9 LDQK+R++ Sbjct: 253 LDQKLRVK 260>NP_054799 Length = 1548 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 LDQ +RLR Sbjct: 505 LDQFVRLR 512>NP_001193770 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RLDQKI 6 RLDQKI Sbjct: 432 RLDQKI 437>NP_149035 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLDQKIRLR 9 +LD +IR+R Sbjct: 31 KLDHEIRMR 39>NP_001015055 Length = 563 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLDQKIRLR 9 +LD +IR+R Sbjct: 44 KLDHEIRMR 52>XP_005254478 Length = 1548 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LDQKIRLR 9 LDQ +RLR Sbjct: 505 LDQFVRLR 512>XP_005264536 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLDQKIRLR 9 +LD +IR+R Sbjct: 44 KLDHEIRMR 52>XP_005264535 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RLDQKIRLR 9 +LD +IR+R Sbjct: 44 KLDHEIRMR 52>NP_116256 Length = 695 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLDQKIR 7 RL+QK+R Sbjct: 622 RLEQKLR 628>XP_005254442 Length = 3041 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LDQKIR 7 LDQK+R Sbjct: 1737 LDQKVR 1742>XP_005253235 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RLDQKIR 7 RL+QK+R Sbjct: 623 RLEQKLR 629>NP_002364 Length = 2803 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LDQKIR 7 LDQK+R Sbjct: 1499 LDQKVR 1504Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.154 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 469,871 Number of extensions: 856 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |