Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001035829 17 4312 NP_001166996 17 4312 NP_004591 17 4312 NP_001166995 17 4312 NP_001035828 17 4312 NP_665879 17 4312 XP_006721650 17 4312 XP_006711560 17 4312 XP_006711559 17 4312 XP_006711558 17 4312 NP_003546 17 4312 NP_000273 16 5631 NP_001171475 16 5631 NP_001244960 16 5631 XP_005254116 16 5631 NP_060426 16 7355 NP_444253 15 9605 NP_444255 15 9605 NP_005148 15 9605 NP_055756 15 9605 NP_009297 15 9605 NP_060587 15 9605 NP_001264214 15 9605 NP_055646 15 9605 XP_005261449 15 9605 XP_005261448 15 9605 XP_006718858 15 9605 XP_005270021 15 9605 XP_005270020 15 9605 XP_005270019 15 9605 XP_005247550 15 9605 XP_006713712 15 9605 XP_005247549 15 9605 XP_006713495 15 9605 NP_001139669 15 9605 NP_795370 15 9605>NP_001035829 Length = 534 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>NP_001166996 Length = 518 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>NP_004591 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>NP_001166995 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>NP_001035828 Length = 525 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>NP_665879 Length = 349 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLCLIVSR 8 RLC +VSR Sbjct: 328 RLCPVVSR 335>XP_006721650 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCLI+S T Sbjct: 212 LCLIISYT 219>XP_006711560 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 399 MCMVVTRT 406>XP_006711559 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 421 MCMVVTRT 428>XP_006711558 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LCLIVSRT 9 +C++V+RT Sbjct: 421 MCMVVTRT 428>NP_003546 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCLI+S T Sbjct: 212 LCLIISYT 219>NP_000273 Length = 728 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLCLIVSR 8 R CL+VSR Sbjct: 42 RQCLMVSR 49>NP_001171475 Length = 681 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLCLIVSR 8 R CL+VSR Sbjct: 42 RQCLMVSR 49>NP_001244960 Length = 518 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 CLIVSRT 9 CL++SRT Sbjct: 76 CLLLSRT 82>XP_005254116 Length = 640 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLCLIVSR 8 R CL+VSR Sbjct: 42 RQCLMVSR 49>NP_060426 Length = 448 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RLCLIVSR 8 +LCL VSR Sbjct: 106 KLCLEVSR 113>NP_444253 Length = 1914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCL+ +RT Sbjct: 472 LCLLKART 479>NP_444255 Length = 1863 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCL+ +RT Sbjct: 472 LCLLKART 479>NP_005148 Length = 1130 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LCLIVSR 8 LCL +SR Sbjct: 1039 LCLAISR 1045>NP_055756 Length = 970 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CLIVSRT 9 CL +SRT Sbjct: 65 CLFLSRT 71>NP_009297 Length = 1149 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LCLIVSR 8 LCL +SR Sbjct: 1058 LCLAISR 1064>NP_060587 Length = 1224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 CLIVSR 8 CL+VSR Sbjct: 913 CLLVSR 918>NP_001264214 Length = 1437 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CLIVSRT 9 CLI +RT Sbjct: 620 CLIANRT 626>NP_055646 Length = 2925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RLCLIVS 7 R CL+VS Sbjct: 2681 RACLVVS 2687>XP_005261449 Length = 1029 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CLIVSRT 9 CL +SRT Sbjct: 127 CLFLSRT 133>XP_005261448 Length = 1032 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CLIVSRT 9 CL +SRT Sbjct: 127 CLFLSRT 133>XP_006718858 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CLIVSRT 9 CLI +RT Sbjct: 96 CLIANRT 102>XP_005270021 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 CLIVSR 8 CL+VSR Sbjct: 442 CLLVSR 447>XP_005270020 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 CLIVSR 8 CL+VSR Sbjct: 654 CLLVSR 659>XP_005270019 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 CLIVSR 8 CL+VSR Sbjct: 654 CLLVSR 659>XP_005247550 Length = 1856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCL+ +RT Sbjct: 482 LCLLKART 489>XP_006713712 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCL+ +RT Sbjct: 482 LCLLKART 489>XP_005247549 Length = 1924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LCLIVSRT 9 LCL+ +RT Sbjct: 482 LCLLKART 489>XP_006713495 Length = 2969 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RLCLIVS 7 R CL+VS Sbjct: 2725 RACLVVS 2731>NP_001139669 Length = 7081 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 CLIVSRT 9 C+++SRT Sbjct: 5546 CVVLSRT 5552>NP_795370 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LCLIVS 7 LCLI+S Sbjct: 243 LCLIIS 248Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.346 0.147 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 519,666 Number of extensions: 622 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |