Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_004324                                                              21     229
NP_002871                                                              21     229
XP_005250103                                                           21     229
XP_005250102                                                           21     229
XP_005265416                                                           21     229
XP_005265415                                                           21     229
XP_005265414                                                           21     229
XP_005265412                                                           21     229
NP_001243125                                                           20     509
NP_001645                                                              20     509
XP_006724592                                                           20     509
NP_212133                                                              18    1935
NP_940938                                                              18    1935
NP_001138888                                                           18    1935
XP_005259958                                                           18    1935
XP_005259957                                                           18    1935
XP_005259959                                                           18    1935
XP_005259956                                                           18    1935
XP_005259955                                                           18    1935
NP_775859                                                              17    4312
NP_056530                                                              17    4312
NP_006215                                                              17    4312
NP_065805                                                              16    5631
NP_001257711                                                           16    5631
NP_003192                                                              16    5631
NP_036531                                                              16    5631
NP_001271207                                                           16    5631
NP_001271206                                                           16    5631
XP_005247728                                                           16    5631
XP_006713777                                                           16    5631
NP_077277                                                              16    7355
NP_001034974                                                           16    7355
NP_005152                                                              16    7355
NP_003557                                                              16    7355
NP_932348                                                              16    7355
XP_006725002                                                           16    7355
XP_006723438                                                           16    7355
XP_005259307                                                           16    7355
XP_006723437                                                           16    7355
XP_005259306                                                           16    7355
XP_006723436                                                           16    7355
XP_005259304                                                           16    7355
XP_005259305                                                           16    7355
XP_006722541                                                           16    7355
XP_005256402                                                           16    7355
XP_006722342                                                           16    7355
XP_006719694                                                           16    7355
XP_006719085                                                           16    7355
XP_006719083                                                           16    7355
XP_005276117                                                           16    7355
NP_073624                                                              15    9605
NP_899236                                                              15    9605
NP_056363                                                              15    9605
NP_001138241                                                           15    9605
NP_001138242                                                           15    9605
NP_060649                                                              15    9605
NP_001273443                                                           15    9605
NP_851997                                                              15    9605
NP_036204                                                              15    9605
NP_060530                                                              15    9605
XP_005256727                                                           15    9605
XP_005256725                                                           15    9605
XP_005256724                                                           15    9605
XP_006719172                                                           15    9605
XP_006719171                                                           15    9605
XP_005253481                                                           15    9605
XP_006715232                                                           15    9605
XP_005249382                                                           15    9605
XP_005249381                                                           15    9605
XP_005249380                                                           15    9605
XP_005249379                                                           15    9605
XP_005249377                                                           15    9605
XP_005249376                                                           15    9605
XP_005249375                                                           15    9605
XP_005249374                                                           15    9605
XP_005249373                                                           15    9605
XP_005249372                                                           15    9605
XP_005249371                                                           15    9605
XP_005249370                                                           15    9605
XP_005249369                                                           15    9605
XP_005249368                                                           15    9605
XP_005249367                                                           15    9605
XP_005263546                                                           15    9605
XP_006710887                                                           15    9605
NP_056536                                                              15    9605
NP_005277                                                              15    9605
>NP_004324
          Length = 766

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 597 LATVKSRW 604
>NP_002871
          Length = 648

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 489 LATVKSRW 496
>XP_005250103
          Length = 758

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 597 LATVKSRW 604
>XP_005250102
          Length = 767

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 597 LATVKSRW 604
>XP_005265416
          Length = 534

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 375 LATVKSRW 382
>XP_005265415
          Length = 567

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 408 LATVKSRW 415
>XP_005265414
          Length = 615

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 456 LATVKSRW 463
>XP_005265412
          Length = 648

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVKSRW
Sbjct: 489 LATVKSRW 496
>NP_001243125
          Length = 609

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVK+RW
Sbjct: 453 LATVKTRW 460
>NP_001645
          Length = 606

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVK+RW
Sbjct: 450 LATVKTRW 457
>XP_006724592
          Length = 611

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LATVK+RW
Sbjct: 455 LATVKTRW 462
>NP_212133
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>NP_940938
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>NP_001138888
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>XP_005259958
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>XP_005259957
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>XP_005259959
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>XP_005259956
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>XP_005259955
          Length = 189

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   LATVKSRW 9
           LATV +RW
Sbjct: 98  LATVNARW 105
>NP_775859
          Length = 1326

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 1   RLATVKS 7
           RLATVKS
Sbjct: 512 RLATVKS 518
>NP_056530
          Length = 509

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   LATVKSRW 9
           LAT++S+W
Sbjct: 108 LATLQSQW 115
>NP_006215
          Length = 270

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +L TVK +W
Sbjct: 194 KLVTVKFKW 202
>NP_065805
          Length = 1444

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   TVKSRW 9
           TVKS+W
Sbjct: 960 TVKSQW 965
>NP_001257711
          Length = 214

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   RLATVKSRW 9
           +L TVK  W
Sbjct: 149 KLKTVKENW 157
>NP_003192
          Length = 246

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   RLATVKSRW 9
           +L TVK  W
Sbjct: 181 KLKTVKENW 189
>NP_036531
          Length = 271

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +L T+K +W
Sbjct: 194 KLVTIKFKW 202
>NP_001271207
          Length = 273

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +L T+K +W
Sbjct: 196 KLVTIKFKW 204
>NP_001271206
          Length = 272

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +L T+K +W
Sbjct: 194 KLVTIKFKW 202
>XP_005247728
          Length = 1413

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   TVKSRW 9
           TVKS+W
Sbjct: 929 TVKSQW 934
>XP_006713777
          Length = 1424

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   TVKSRW 9
           TVKS+W
Sbjct: 940 TVKSQW 945
>NP_077277
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>NP_001034974
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>NP_005152
          Length = 380

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           +ATV S W
Sbjct: 188 VATVSSEW 195
>NP_003557
          Length = 1411

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 5/8 (62%)

Query: 2    LATVKSRW 9
            L TVK  W
Sbjct: 1250 LGTVKKEW 1257
>NP_932348
          Length = 915

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ATVKSRW 9
           +TVKS W
Sbjct: 357 STVKSAW 363
>XP_006725002
          Length = 599

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           RLA++  RW
Sbjct: 432 RLASLSLRW 440
>XP_006723438
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_005259307
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_006723437
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_005259306
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_006723436
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_005259304
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_005259305
          Length = 495

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   LATVKSRW 9
           LAT  +RW
Sbjct: 248 LATAHARW 255
>XP_006722541
          Length = 639

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           ++AT+  RW
Sbjct: 606 QMATMSGRW 614
>XP_005256402
          Length = 751

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ATVKSRW 9
           +TVKS W
Sbjct: 357 STVKSAW 363
>XP_006722342
          Length = 762

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ATVKSRW 9
           +TVKS W
Sbjct: 368 STVKSAW 374
>XP_006719694
          Length = 1465

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 5/8 (62%)

Query: 2    LATVKSRW 9
            L TVK  W
Sbjct: 1304 LGTVKKEW 1311
>XP_006719085
          Length = 684

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1   RLATVKSR 8
           +LATVKS+
Sbjct: 625 QLATVKSK 632
>XP_006719083
          Length = 735

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1   RLATVKSR 8
           +LATVKS+
Sbjct: 676 QLATVKSK 683
>XP_005276117
          Length = 599

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           RLA++  RW
Sbjct: 432 RLASLSLRW 440
>NP_073624
          Length = 279

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2  LATVKSRW 9
          LAT  S+W
Sbjct: 72 LATKNSKW 79
>NP_899236
          Length = 5497

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 2842 QLNTIKTNW 2850
>NP_056363
          Length = 5171

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 2516 QLNTIKTNW 2524
>NP_001138241
          Length = 5675

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 3020 QLNTIKTNW 3028
>NP_001138242
          Length = 5537

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 2882 QLNTIKTNW 2890
>NP_060649
          Length = 1270

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1207 ATVPSQW 1213
>NP_001273443
          Length = 1269

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1206 ATVPSQW 1212
>NP_851997
          Length = 1278

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1215 ATVPSQW 1221
>NP_036204
          Length = 652

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  LATVKSR 8
          LATVKS+
Sbjct: 60 LATVKSK 66
>NP_060530
          Length = 1012

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2  LATVKSRW 9
          LAT +S W
Sbjct: 15 LATARSLW 22
>XP_005256727
          Length = 1047

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +LATV S W
Sbjct: 257 KLATVISVW 265
>XP_005256725
          Length = 1062

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +LATV S W
Sbjct: 272 KLATVISVW 280
>XP_005256724
          Length = 1062

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +LATV S W
Sbjct: 272 KLATVISVW 280
>XP_006719172
          Length = 1270

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1207 ATVPSQW 1213
>XP_006719171
          Length = 1270

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1207 ATVPSQW 1213
>XP_005253481
          Length = 1277

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3    ATVKSRW 9
            ATV S+W
Sbjct: 1214 ATVPSQW 1220
>XP_006715232
          Length = 7498

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4928 QLNTIKTNW 4936
>XP_005249382
          Length = 5732

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 3053 QLNTIKTNW 3061
>XP_005249381
          Length = 7281

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4602 QLNTIKTNW 4610
>XP_005249380
          Length = 7607

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4928 QLNTIKTNW 4936
>XP_005249379
          Length = 7633

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4954 QLNTIKTNW 4962
>XP_005249377
          Length = 7640

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4961 QLNTIKTNW 4969
>XP_005249376
          Length = 7647

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 4968 QLNTIKTNW 4976
>XP_005249375
          Length = 7680

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5001 QLNTIKTNW 5009
>XP_005249374
          Length = 7709

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5139 QLNTIKTNW 5147
>XP_005249373
          Length = 7723

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5044 QLNTIKTNW 5052
>XP_005249372
          Length = 7785

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5106 QLNTIKTNW 5114
>XP_005249371
          Length = 7788

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5139 QLNTIKTNW 5147
>XP_005249370
          Length = 7794

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5139 QLNTIKTNW 5147
>XP_005249369
          Length = 7797

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5118 QLNTIKTNW 5126
>XP_005249368
          Length = 7812

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5139 QLNTIKTNW 5147
>XP_005249367
          Length = 7818

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1    RLATVKSRW 9
            +L T+K+ W
Sbjct: 5139 QLNTIKTNW 5147
>XP_005263546
          Length = 160

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2  LATVKSRW 9
          LAT  S+W
Sbjct: 72 LATKNSKW 79
>XP_006710887
          Length = 279

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2  LATVKSRW 9
          LAT  S+W
Sbjct: 72 LATKNSKW 79
>NP_056536
          Length = 1058

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RLATVKSRW 9
           +LATV S W
Sbjct: 268 KLATVISVW 276
>NP_005277
          Length = 333

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   LATVKSR 8
           LATV+SR
Sbjct: 147 LATVRSR 153
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.326    0.124    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 372,178
Number of extensions: 697
Number of successful extensions: 86
Number of sequences better than 10000.0: 86
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 86
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.2 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package