Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 19 665 NP_001035957 19 665 XP_006721990 19 665 XP_006721989 19 665 XP_005258041 19 665 XP_006721988 19 665 XP_006721987 19 665 XP_006721986 19 665 XP_005258040 19 665 XP_006721985 19 665 NP_001271175 17 2528 NP_056371 17 2528 NP_001271176 17 2528 NP_001271174 17 2528 XP_005267576 17 2528 XP_006720175 17 2528 XP_006720174 17 2528 XP_005267573 17 2528 XP_006720173 17 2528 XP_006720172 17 2528 XP_005267571 17 2528 XP_005256857 17 4312 NP_079222 16 7355 XP_005256222 16 7355 XP_005256221 16 7355 XP_005256220 16 7355 XP_005256217 16 7355 XP_005256219 16 7355 XP_005256218 16 7355 XP_005256216 16 7355 XP_006721339 16 7355 XP_005256215 16 7355 XP_005256214 16 7355 XP_006721338 16 7355 XP_005256213 16 7355 NP_001009899 15 9605 NP_001229697 15 9605 NP_001229696 15 9605 NP_056255 15 9605 XP_006726478 15 9605 XP_005266968 15 9605 XP_005266967 15 9605 XP_005266964 15 9605 XP_006714496 15 9605 XP_005247266 15 9605 XP_005247265 15 9605 XP_006710224 15 9605>NP_000258 Length = 2818 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2573 RKVSVSESN 2581>NP_001035957 Length = 2839 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2594 RKVSVSESN 2602>XP_006721990 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2604 RKVSVSESN 2612>XP_006721989 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2604 RKVSVSESN 2612>XP_005258041 Length = 2836 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2573 RKVSVSESN 2581>XP_006721988 Length = 2846 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2583 RKVSVSESN 2591>XP_006721987 Length = 2849 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2604 RKVSVSESN 2612>XP_006721986 Length = 2854 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2591 RKVSVSESN 2599>XP_005258040 Length = 2857 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2594 RKVSVSESN 2602>XP_006721985 Length = 2867 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RKVSVS+SN Sbjct: 2604 RKVSVSESN 2612>NP_001271175 Length = 1782 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>NP_056371 Length = 1804 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>NP_001271176 Length = 1803 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>NP_001271174 Length = 1783 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_005267576 Length = 1782 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_006720175 Length = 1783 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_006720174 Length = 1803 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_005267573 Length = 1804 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_006720173 Length = 1804 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_006720172 Length = 1804 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_005267571 Length = 1804 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKVSVSQSN 9 RK+S+S+SN Sbjct: 427 RKISLSKSN 435>XP_005256857 Length = 246 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KVSVSQSN 9 KVSV QSN Sbjct: 236 KVSVPQSN 243>NP_079222 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256222 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256221 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256220 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256217 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256219 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256218 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_005256216 Length = 254 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 120 KKVGISQEN 128>XP_006721339 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 126 KKVGISQEN 134>XP_005256215 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 126 KKVGISQEN 134>XP_005256214 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 133 KKVGISQEN 141>XP_006721338 Length = 268 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 134 KKVGISQEN 142>XP_005256213 Length = 300 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 +KV +SQ N Sbjct: 166 KKVGISQEN 174>NP_001009899 Length = 2245 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSVSQSN 9 VSVSQ+N Sbjct: 851 VSVSQAN 857>NP_001229697 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 520 RKITIGQGN 528>NP_001229696 Length = 979 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 586 RKITIGQGN 594>NP_056255 Length = 978 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 585 RKITIGQGN 593>XP_006726478 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKVSVSQSN 9 R+VS SQS+ Sbjct: 262 RRVSFSQSS 270>XP_005266968 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 586 RKITIGQGN 594>XP_005266967 Length = 987 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 586 RKITIGQGN 594>XP_005266964 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 RKVSVSQSN 9 RK+++ Q N Sbjct: 585 RKITIGQGN 593>XP_006714496 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKVSVSQSN 9 R+VS SQS+ Sbjct: 262 RRVSFSQSS 270>XP_005247266 Length = 2189 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSVSQSN 9 VSVSQ+N Sbjct: 795 VSVSQAN 801>XP_005247265 Length = 2211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSVSQSN 9 VSVSQ+N Sbjct: 817 VSVSQAN 823>XP_006710224 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKVSVSQSN 9 R+VS SQS+ Sbjct: 262 RRVSFSQSS 270Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.102 0.222 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 242,237 Number of extensions: 273 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |