Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1482 XP_005262424 18 1482 XP_005263774 17 4312 XP_005263773 17 4312 XP_005263772 17 4312 NP_001188477 16 7355 NP_001033794 16 7355 NP_937762 15 9605 NP_001121190 15 9605 NP_000218 15 9605 NP_001121189 15 9605 NP_005217 15 9605 NP_001004482 15 9605 NP_001004481 15 9605>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 RKTMS STT Sbjct: 2128 RKTMSPSTT 2136>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 RKTMS STT Sbjct: 1923 RKTMSPSTT 1931>XP_005263774 Length = 482 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 R+T S+STT Sbjct: 5 RRTCSISTT 13>XP_005263773 Length = 516 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 R+T S+STT Sbjct: 5 RRTCSISTT 13>XP_005263772 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 R+T S+STT Sbjct: 5 RRTCSISTT 13>NP_001188477 Length = 382 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 R TM+LST+ Sbjct: 350 RHTMALSTS 358>NP_001033794 Length = 731 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KTMSLST 8 KT+SLST Sbjct: 566 KTLSLST 572>NP_937762 Length = 3333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 +KT +L+TT Sbjct: 2578 KKTFNLNTT 2586>NP_001121190 Length = 1668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 +KT +L+TT Sbjct: 913 KKTFNLNTT 921>NP_000218 Length = 1724 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 +KT +L+TT Sbjct: 969 KKTFNLNTT 977>NP_001121189 Length = 3277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKTMSLSTT 9 +KT +L+TT Sbjct: 2522 KKTFNLNTT 2530>NP_005217 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKTMSLSTT 9 +KT SLS T Sbjct: 101 KKTFSLSPT 109>NP_001004482 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RKTMSLS 7 RKT+SLS Sbjct: 89 RKTISLS 95>NP_001004481 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 RKTMSLS 7 RKT+SLS Sbjct: 89 RKTISLS 95Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.102 0.234 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 262,407 Number of extensions: 420 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |