Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 19 869 XP_006716142 19 869 XP_005250088 19 869 XP_006716141 19 869 XP_005250085 19 869 XP_006716140 19 869 XP_005250084 19 869 XP_005250083 19 869 XP_005250082 19 869 NP_055901 18 1935 NP_055510 17 2528 XP_005256934 17 2528 XP_006721670 17 2528 NP_075068 17 4312 NP_631981 17 4312 NP_062535 16 5631 XP_005267917 16 5631 NP_057332 16 7355 NP_001264262 16 7355 XP_003959998 16 7355 XP_005266305 16 7355 XP_005266304 16 7355 NP_002537 15 9605 NP_683759 15 9605 NP_003148 15 9605 NP_001277251 15 9605 NP_005500 15 9605 NP_001277250 15 9605 XP_006714623 15 9605 XP_005271970 15 9605 XP_005271969 15 9605 XP_005271967 15 9605 XP_005271966 15 9605 XP_006713373 15 9605 XP_006713055 15 9605>NP_733751 Length = 4911 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1683 RKASSQER 1690>XP_006716142 Length = 4927 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_005250088 Length = 4928 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_006716141 Length = 4959 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_005250085 Length = 4979 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_006716140 Length = 4982 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_005250084 Length = 4982 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>XP_005250083 Length = 4982 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1699 RKASSQER 1706>XP_005250082 Length = 4983 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKASSQER Sbjct: 1700 RKASSQER 1707>NP_055901 Length = 711 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 RKASSQER 8 RKA+SQER Sbjct: 113 RKAASQER 120>NP_055510 Length = 1427 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKASSQERT 9 +KA+SQE+T Sbjct: 1061 KKANSQEKT 1069>XP_005256934 Length = 1434 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKASSQERT 9 +KA+SQE+T Sbjct: 1061 KKANSQEKT 1069>XP_006721670 Length = 1471 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKASSQERT 9 +KA+SQE+T Sbjct: 1061 KKANSQEKT 1069>NP_075068 Length = 1146 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKASSQERT 9 +KASS++RT Sbjct: 32 KKASSRKRT 40>NP_631981 Length = 699 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 RKASSQERT 9 +KASS++RT Sbjct: 32 KKASSRKRT 40>NP_062535 Length = 2146 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R+A SQER Sbjct: 1115 RRAGSQER 1122>XP_005267917 Length = 2061 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R+A SQER Sbjct: 1115 RRAGSQER 1122>NP_057332 Length = 1901 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KASSQER 8 KASS+ER Sbjct: 1883 KASSEER 1889>NP_001264262 Length = 917 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKASSQERT 9 +KA +QE+T Sbjct: 795 KKADNQEKT 803>XP_003959998 Length = 639 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKASSQERT 9 +KA +QE+T Sbjct: 517 KKADNQEKT 525>XP_005266305 Length = 1856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KASSQER 8 KASS+ER Sbjct: 1838 KASSEER 1844>XP_005266304 Length = 1873 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 KASSQER 8 KASS+ER Sbjct: 1855 KASSEER 1861>NP_002537 Length = 401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKASSQERT 9 R+ SSQE+T Sbjct: 242 RQHSSQEQT 250>NP_683759 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KASSQERT 9 KAS+ ERT Sbjct: 435 KASAPERT 442>NP_003148 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 40 RNASSRER 47>NP_001277251 Length = 2854 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 125 RNASSKER 132>NP_005500 Length = 3027 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>NP_001277250 Length = 3048 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>XP_006714623 Length = 1625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>XP_005271970 Length = 2931 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>XP_005271969 Length = 3020 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 232 RNASSKER 239>XP_005271967 Length = 3065 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>XP_005271966 Length = 3086 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 298 RNASSKER 305>XP_006713373 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKASSQER 8 R ASS+ER Sbjct: 40 RNASSRER 47>XP_006713055 Length = 195 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 RKASSQERT 9 +KA+S +RT Sbjct: 185 KKATSSQRT 193Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.290 0.0975 0.216 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 370,734 Number of extensions: 600 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |