Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 19 869 NP_001013650 17 2528 NP_006421 17 3301 NP_001243650 17 3301 NP_060206 16 5631 XP_005255481 16 5631 XP_005255479 16 5631 NP_001092879 16 7355 NP_006315 16 7355 XP_005273924 16 7355 XP_006718550 16 7355 XP_006718549 16 7355 XP_005276064 16 7355 NP_055453 15 9605 NP_004870 15 9605 NP_001277064 15 9605 NP_113609 15 9605 XP_006725014 15 9605 XP_006725013 15 9605 XP_006725012 15 9605 XP_006722192 15 9605 XP_006711118 15 9605 XP_006711117 15 9605>NP_004351 Length = 882 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RKAQSVEAG 9 RKAQ VEAG Sbjct: 696 RKAQPVEAG 704>NP_001013650 Length = 463 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 RKAQSVEAG 9 RKA +VEAG Sbjct: 11 RKAPAVEAG 19>NP_006421 Length = 539 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KAQSVEAG 9 KAQ +EAG Sbjct: 96 KAQDIEAG 103>NP_001243650 Length = 509 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KAQSVEAG 9 KAQ +EAG Sbjct: 66 KAQDIEAG 73>NP_060206 Length = 353 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKAQSVEAG 9 R+ QSVE+G Sbjct: 115 RRFQSVESG 123>XP_005255481 Length = 439 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKAQSVEAG 9 R+ QSVE+G Sbjct: 201 RRFQSVESG 209>XP_005255479 Length = 439 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RKAQSVEAG 9 R+ QSVE+G Sbjct: 201 RRFQSVESG 209>NP_001092879 Length = 1523 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAQSVEAG 9 KAQ EAG Sbjct: 973 KAQEAEAG 980>NP_006315 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RKAQSVEA 8 RKAQS+ A Sbjct: 53 RKAQSIPA 60>XP_005273924 Length = 993 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAQSVEAG 9 KAQ EAG Sbjct: 443 KAQEAEAG 450>XP_006718550 Length = 1063 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAQSVEAG 9 KAQ EAG Sbjct: 985 KAQEAEAG 992>XP_006718549 Length = 1535 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 KAQSVEAG 9 KAQ EAG Sbjct: 985 KAQEAEAG 992>XP_005276064 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 AQSVEAG 9 AQS+EAG Sbjct: 291 AQSLEAG 297>NP_055453 Length = 1416 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 591 KKAASVEEG 599>NP_004870 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RKAQSVE 7 R+AQS+E Sbjct: 52 RRAQSIE 58>NP_001277064 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RKAQSVE 7 R+AQS+E Sbjct: 38 RRAQSIE 44>NP_113609 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 QSVEAG 9 QSVEAG Sbjct: 567 QSVEAG 572>XP_006725014 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 564 KKAASVEEG 572>XP_006725013 Length = 1389 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 564 KKAASVEEG 572>XP_006725012 Length = 1388 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 563 KKAASVEEG 571>XP_006722192 Length = 509 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 QSVEAG 9 QSVEAG Sbjct: 404 QSVEAG 409>XP_006711118 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 564 KKAASVEEG 572>XP_006711117 Length = 1413 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RKAQSVEAG 9 +KA SVE G Sbjct: 588 KKAASVEEG 596Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.298 0.111 0.265 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 268,204 Number of extensions: 321 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |