Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 18 1482 NP_001138390 18 1482 NP_001138386 18 1482 NP_001138387 18 1482 NP_000132 18 1482 NP_075259 18 1482 NP_001138388 18 1482 NP_001138391 18 1482 NP_001138385 18 1482 NP_075418 18 1482 XP_006717776 18 1482 XP_006717775 18 1482 XP_006717774 18 1482 XP_006717773 18 1482 XP_006717772 18 1482 XP_006717771 18 1482 NP_004384 17 3301 NP_001171110 17 3301 NP_001171113 17 3301 NP_001171114 17 3301 NP_001159400 17 3301 NP_001171111 17 3301 NP_001171112 17 3301 NP_001171115 17 3301 NP_001171107 17 3301 NP_001171105 17 3301 NP_001171106 17 3301 NP_001171109 17 3301 NP_001171108 17 3301 NP_036605 16 5631 NP_001092313 16 5631 XP_006724289 16 5631 XP_005261565 16 5631 NP_078926 16 7355 NP_056073 15 9605 XP_006717418 15 9605 XP_006717082 15 9605 XP_006717081 15 9605>NP_001138389 Length = 705 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 330 RITTRLSST 338>NP_001138390 Length = 704 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 329 RITTRLSST 337>NP_001138386 Length = 709 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 334 RITTRLSST 342>NP_001138387 Length = 707 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 357 RITTRLSST 365>NP_000132 Length = 821 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 446 RITTRLSST 454>NP_075259 Length = 822 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 447 RITTRLSST 455>NP_001138388 Length = 706 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 331 RITTRLSST 339>NP_001138391 Length = 680 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 358 RITTRLSST 366>NP_001138385 Length = 769 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 447 RITTRLSST 455>NP_075418 Length = 732 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 357 RITTRLSST 365>XP_006717776 Length = 806 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 465 RITTRLSST 473>XP_006717775 Length = 726 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 351 RITTRLSST 359>XP_006717774 Length = 752 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 377 RITTRLSST 385>XP_006717773 Length = 807 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 466 RITTRLSST 474>XP_006717772 Length = 838 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 463 RITTRLSST 471>XP_006717771 Length = 839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RITTRLSLT 9 RITTRLS T Sbjct: 464 RITTRLSST 472>NP_004384 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171110 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171113 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171114 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001159400 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171111 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171112 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171115 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171107 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171105 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171106 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171109 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_001171108 Length = 895 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RITTRLSLT 9 R+TT++S+T Sbjct: 461 RVTTKVSIT 469>NP_036605 Length = 166 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 TTR+SLT Sbjct: 54 TTRISLT 60>NP_001092313 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RITTRLSL 8 RITTR+ L Sbjct: 197 RITTRIGL 204>XP_006724289 Length = 166 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 TTR+SLT Sbjct: 54 TTRISLT 60>XP_005261565 Length = 197 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 TTR+SLT Sbjct: 85 TTRISLT 91>NP_078926 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITTRLSLT 9 +TTR SLT Sbjct: 103 VTTRWSLT 110>NP_056073 Length = 1219 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 +TRLSLT Sbjct: 1093 STRLSLT 1099>XP_006717418 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITTRLSL 8 ITTRLS+ Sbjct: 36 ITTRLSV 42Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITTRLSL 8 ITTRLS+ Sbjct: 43 ITTRLSV 49Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITTRLSL 8 ITTRLS+ Sbjct: 101 ITTRLSV 107Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ITTRLSL 8 ITTRLS+ Sbjct: 166 ITTRLSV 172>XP_006717082 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 +TRLSLT Sbjct: 1025 STRLSLT 1031>XP_006717081 Length = 1209 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TTRLSLT 9 +TRLSLT Sbjct: 1083 STRLSLT 1089Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.132 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 242,626 Number of extensions: 286 Number of successful extensions: 41 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |