Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 18 1482 NP_001185763 18 1482 NP_055459 18 1482 XP_006726410 18 1482 XP_006711719 18 1482 XP_006711718 18 1482 XP_006711717 18 1482 XP_006711716 18 1482 XP_006711715 18 1482 XP_006711714 18 1482 XP_006711713 18 1482 XP_006711712 18 1482 XP_006711711 18 1482 XP_006711710 18 1482 XP_006711709 18 1482 XP_005277503 18 1482 XP_005273038 18 1482 XP_006711708 18 1482 XP_005277500 18 1482 XP_006711707 18 1482 XP_005277499 18 1482 XP_006711706 18 1482 XP_006711705 18 1482 XP_006711164 18 1482 XP_006710140 18 1482 NP_001107228 17 3301 NP_001244918 17 3301 NP_001107227 17 3301 NP_001944 17 3301 NP_001244917 17 3301 NP_001171559 16 5631 NP_003889 16 5631 NP_001097 16 5631 XP_005267257 16 5631 XP_005267256 16 5631 XP_005267255 16 5631 XP_006715655 16 5631 XP_005267254 16 5631 XP_006715654 16 5631 XP_005265640 16 5631 NP_000229 16 7355 NP_001191727 16 7355 NP_742053 16 7355 NP_742054 16 7355 NP_000927 16 7355 NP_110406 16 7355 NP_001265848 16 7355 NP_001265849 16 7355 NP_775115 16 7355 XP_006716040 16 7355 NP_444505 15 9605 NP_000993 15 9605 NP_001092314 15 9605>NP_001185761 Length = 2240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1685 RGTIELGRI 1693>NP_001185763 Length = 2362 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1791 RGTIELGRI 1799>NP_055459 Length = 2346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1791 RGTIELGRI 1799>XP_006726410 Length = 2087 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1532 RGTIELGRI 1540>XP_006711719 Length = 2302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1747 RGTIELGRI 1755>XP_006711718 Length = 1436 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 798 RGTIELGRI 806>XP_006711717 Length = 2385 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1747 RGTIELGRI 1755>XP_006711716 Length = 2411 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1856 RGTIELGRI 1864>XP_006711715 Length = 2428 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1790 RGTIELGRI 1798>XP_006711714 Length = 2429 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1791 RGTIELGRI 1799>XP_006711713 Length = 2432 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1794 RGTIELGRI 1802>XP_006711712 Length = 2473 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_006711711 Length = 2482 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1844 RGTIELGRI 1852>XP_006711710 Length = 2494 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1856 RGTIELGRI 1864>XP_006711709 Length = 2495 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1857 RGTIELGRI 1865>XP_005277503 Length = 2498 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_005273038 Length = 2509 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_006711708 Length = 2512 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_005277500 Length = 2525 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_006711707 Length = 2553 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_005277499 Length = 2561 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_006711706 Length = 2591 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1953 RGTIELGRI 1961>XP_006711705 Length = 2592 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1954 RGTIELGRI 1962>XP_006711164 Length = 2087 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 1532 RGTIELGRI 1540>XP_006710140 Length = 290 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 RGTIEL RI Sbjct: 44 RGTIELGRI 52>NP_001107228 Length = 482 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GT+ELVR Sbjct: 387 GTVELVR 393>NP_001244918 Length = 487 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GT+ELVR Sbjct: 392 GTVELVR 398>NP_001107227 Length = 482 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GT+ELVR Sbjct: 387 GTVELVR 393>NP_001944 Length = 482 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GT+ELVR Sbjct: 387 GTVELVR 393>NP_001244917 Length = 482 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GT+ELVR Sbjct: 387 GTVELVR 393>NP_001171559 Length = 1259 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 686 GTIVLVRI 693>NP_003889 Length = 1496 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 923 GTIVLVRI 930>NP_001097 Length = 512 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GTIELV+ Sbjct: 68 GTIELVK 74>XP_005267257 Length = 909 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 336 GTIVLVRI 343>XP_005267256 Length = 1113 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 540 GTIVLVRI 547>XP_005267255 Length = 1165 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 592 GTIVLVRI 599>XP_006715655 Length = 1288 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 923 GTIVLVRI 930>XP_005267254 Length = 1443 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 870 GTIVLVRI 877>XP_006715654 Length = 1495 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GTIELVRI 9 GTI LVRI Sbjct: 922 GTIVLVRI 929>XP_005265640 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTIELVR 8 GTIELV+ Sbjct: 89 GTIELVK 95>NP_000229 Length = 1159 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 784 RGSIEILR 791>NP_001191727 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 444 RGSIEILR 451>NP_742053 Length = 888 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 784 RGSIEILR 791>NP_742054 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 444 RGSIEILR 451>NP_000927 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RGTIELVRI 9 +GT ELVR+ Sbjct: 200 QGTPELVRL 208>NP_110406 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 636 RGSIEILR 643>NP_001265848 Length = 958 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 636 RGSIEILR 643>NP_001265849 Length = 835 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 513 RGSIEILR 520>NP_775115 Length = 905 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 583 RGSIEILR 590>XP_006716040 Length = 1137 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RGTIELVR 8 RG+IE++R Sbjct: 762 RGSIEILR 769>NP_444505 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RGTIELV 7 RGTIE++ Sbjct: 149 RGTIEIL 155>NP_000993 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RGTIELV 7 RGTIE++ Sbjct: 149 RGTIEIL 155>NP_001092314 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TIELVRI 9 TIE+VR+ Sbjct: 248 TIEMVRV 254Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.155 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 350,448 Number of extensions: 470 Number of successful extensions: 53 Number of sequences better than 10000.0: 53 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 53 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |