Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 19 869 NP_055192 16 5631 NP_001123359 16 5631 NP_005631 16 7355 NP_060380 16 7355 XP_005258397 16 7355 XP_005258396 16 7355 XP_006722591 16 7355 XP_005264451 16 7355 XP_006712100 16 7355 XP_005264450 16 7355 NP_001099001 15 9605 NP_065870 15 9605 NP_001156001 15 9605 NP_000520 15 9605 XP_005248808 15 9605 XP_005248807 15 9605 XP_005248806 15 9605 XP_005248805 15 9605 XP_005248804 15 9605 XP_005248803 15 9605 XP_005248802 15 9605 XP_005248801 15 9605 XP_005248800 15 9605>NP_003290 Length = 803 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RGTAITLVL 9 RGT ITLVL Sbjct: 243 RGTTITLVL 251>NP_055192 Length = 621 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RGTAITLVL 9 RGTAIT L Sbjct: 11 RGTAITHAL 19>NP_001123359 Length = 568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 RGTAITLVL 9 RGTAIT L Sbjct: 11 RGTAITHAL 19>NP_005631 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTAITLVL 9 GTA+TL L Sbjct: 459 GTAVTLSL 466>NP_060380 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RGTAIT 6 RGTAIT Sbjct: 225 RGTAIT 230>XP_005258397 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTAITLVL 9 GTA+TL L Sbjct: 459 GTAVTLSL 466>XP_005258396 Length = 625 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTAITLVL 9 GTA+TL L Sbjct: 459 GTAVTLSL 466>XP_006722591 Length = 827 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTAITLVL 9 GTA+TL L Sbjct: 459 GTAVTLSL 466>XP_005264451 Length = 240 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RGTAIT 6 RGTAIT Sbjct: 225 RGTAIT 230>XP_006712100 Length = 379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RGTAIT 6 RGTAIT Sbjct: 225 RGTAIT 230>XP_005264450 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 RGTAIT 6 RGTAIT Sbjct: 225 RGTAIT 230>NP_001099001 Length = 1319 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 766 GTAITL 771>NP_065870 Length = 1302 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 749 GTAITL 754>NP_001156001 Length = 1515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 962 GTAITL 967>NP_000520 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GTAITLVL 9 GT IT+V+ Sbjct: 160 GTGITMVI 167>XP_005248808 Length = 1121 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 568 GTAITL 573>XP_005248807 Length = 1182 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 629 GTAITL 634>XP_005248806 Length = 1317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 764 GTAITL 769>XP_005248805 Length = 1345 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 792 GTAITL 797>XP_005248804 Length = 1378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 825 GTAITL 830>XP_005248803 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 902 GTAITL 907>XP_005248802 Length = 1515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 962 GTAITL 967>XP_005248801 Length = 1541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 988 GTAITL 993>XP_005248800 Length = 1541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 GTAITL 7 GTAITL Sbjct: 988 GTAITL 993Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.144 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 361,691 Number of extensions: 464 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |