Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 19 869 NP_001087241 19 869 NP_004110 19 869 XP_005265799 19 869 XP_005265798 19 869 XP_005265797 19 869 NP_005202 18 1935 NP_001275634 18 1935 NP_001035275 17 4312 XP_006723530 17 4312 XP_006723529 17 4312 NP_996898 15 9605 NP_001166126 15 9605 NP_060730 15 9605 NP_003921 15 9605 NP_001139754 15 9605 XP_005268081 15 9605 XP_005249958 15 9605 XP_005247321 15 9605 XP_006713623 15 9605 NP_003127 15 9605>NP_000213 Length = 976 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 634 REALMSELK 642>NP_001087241 Length = 972 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 630 REALMSELK 638>NP_004110 Length = 993 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 655 REALMSELK 663>XP_005265799 Length = 973 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 631 REALMSELK 639>XP_005265798 Length = 976 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 635 REALMSELK 643>XP_005265797 Length = 977 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 REALMS+LK Sbjct: 635 REALMSELK 643>NP_005202 Length = 972 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 +EALMS+LK Sbjct: 627 KEALMSELK 635>NP_001275634 Length = 972 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 REALMSKLK 9 +EALMS+LK Sbjct: 627 KEALMSELK 635>NP_001035275 Length = 523 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 EALMSKLK 9 EALM+K+K Sbjct: 110 EALMTKIK 117>XP_006723530 Length = 470 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 EALMSKLK 9 EALM+K+K Sbjct: 57 EALMTKIK 64>XP_006723529 Length = 523 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 EALMSKLK 9 EALM+K+K Sbjct: 110 EALMTKIK 117>NP_996898 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ALMSKLK 9 ALMSK+K Sbjct: 476 ALMSKVK 482>NP_001166126 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EALMSKLK 9 EALM+K K Sbjct: 176 EALMTKTK 183>NP_060730 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EALMSKLK 9 EALM+K K Sbjct: 110 EALMTKTK 117>NP_003921 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 REALMSKLK 9 RE+L+ K+K Sbjct: 45 RESLIKKIK 53>NP_001139754 Length = 455 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EALMSKLK 9 EAL+ KLK Sbjct: 267 EALIEKLK 274>XP_005268081 Length = 447 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EALMSKLK 9 EAL+ KLK Sbjct: 316 EALIEKLK 323>XP_005249958 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 REALMSKLK 9 RE+L+ K+K Sbjct: 45 RESLIKKIK 53>XP_005247321 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ALMSKLK 9 ALMSK+K Sbjct: 476 ALMSKVK 482>XP_006713623 Length = 778 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ALMSKLK 9 ALMSK+K Sbjct: 459 ALMSKVK 465>NP_003127 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 EALMSKLK 9 EAL+ KLK Sbjct: 316 EALIEKLK 323Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.123 0.281 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 267,037 Number of extensions: 412 Number of successful extensions: 21 Number of sequences better than 10000.0: 21 Number of HSP's gapped: 21 Number of HSP's successfully gapped: 21 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |