Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 20 390 NP_001185763 20 390 NP_055459 20 390 NP_001002811 20 390 NP_001002812 20 390 XP_006726410 20 390 XP_006711719 20 390 XP_006711717 20 390 XP_006711716 20 390 XP_006711715 20 390 XP_006711714 20 390 XP_006711713 20 390 XP_006711712 20 390 XP_006711711 20 390 XP_006711710 20 390 XP_006711709 20 390 XP_005277503 20 390 XP_005273038 20 390 XP_006711708 20 390 XP_005277500 20 390 XP_006711707 20 390 XP_005277499 20 390 XP_006711706 20 390 XP_006711705 20 390 XP_006711164 20 390 XP_003846806 20 390 NP_001020330 17 3301 NP_001020329 17 3301 NP_004346 17 3301 XP_006714874 17 3301 NP_065387 16 7355 NP_001230395 15 9605 NP_821075 15 9605 NP_443083 15 9605 NP_821074 15 9605 NP_001230405 15 9605 NP_001230403 15 9605 NP_001004342 15 9605 XP_006719952 15 9605 XP_006719951 15 9605 XP_005266643 15 9605 XP_005273195 15 9605 XP_005273194 15 9605>NP_001185761 Length = 2240 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>NP_001185763 Length = 2362 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 524 RDVLSSNEA 532>NP_055459 Length = 2346 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 524 RDVLSSNEA 532>NP_001002811 Length = 1132 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>NP_001002812 Length = 969 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 524 RDVLSSNEA 532>XP_006726410 Length = 2087 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 599 RDVLSSNEA 607>XP_006711719 Length = 2302 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>XP_006711717 Length = 2385 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>XP_006711716 Length = 2411 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>XP_006711715 Length = 2428 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 524 RDVLSSNEA 532>XP_006711714 Length = 2429 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 524 RDVLSSNEA 532>XP_006711713 Length = 2432 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 527 RDVLSSNEA 535>XP_006711712 Length = 2473 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711711 Length = 2482 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711710 Length = 2494 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>XP_006711709 Length = 2495 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 590 RDVLSSNEA 598>XP_005277503 Length = 2498 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_005273038 Length = 2509 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711708 Length = 2512 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_005277500 Length = 2525 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711707 Length = 2553 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_005277499 Length = 2561 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711706 Length = 2591 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711705 Length = 2592 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 687 RDVLSSNEA 695>XP_006711164 Length = 2087 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 599 RDVLSSNEA 607>XP_003846806 Length = 136 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RDVISSNEA 9 RDV+SSNEA Sbjct: 53 RDVLSSNEA 61>NP_001020330 Length = 296 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RDVISSNE 8 RD+IS+NE Sbjct: 21 RDLISNNE 28>NP_001020329 Length = 160 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RDVISSNE 8 RD+IS+NE Sbjct: 21 RDLISNNE 28>NP_004346 Length = 232 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RDVISSNE 8 RD+IS+NE Sbjct: 21 RDLISNNE 28>XP_006714874 Length = 334 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 RDVISSNE 8 RD+IS+NE Sbjct: 98 RDLISNNE 105>NP_065387 Length = 1005 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 RDVISSNE 8 RDVISS E Sbjct: 845 RDVISSVE 852>NP_001230395 Length = 687 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 545 RDVTSLNES 553>NP_821075 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 545 RDVTSLNES 553>NP_443083 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 435 RDVTSLNES 443>NP_821074 Length = 1113 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 553 RDVTSLNES 561>NP_001230405 Length = 1078 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 518 RDVTSLNES 526>NP_001230403 Length = 646 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 435 RDVTSLNES 443>NP_001004342 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDVISSNE 8 RD+I SN+ Sbjct: 619 RDIILSND 626>XP_006719952 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 435 RDVTSLNES 443>XP_006719951 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 435 RDVTSLNES 443>XP_005266643 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RDVISSNEA 9 RDV S NE+ Sbjct: 538 RDVTSLNES 546>XP_005273195 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDVISSNE 8 RD+I SN+ Sbjct: 557 RDIILSND 564>XP_005273194 Length = 756 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDVISSNE 8 RD+I SN+ Sbjct: 619 RDIILSND 626Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.115 0.269 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 404,336 Number of extensions: 694 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |