Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 869 NP_001263689 19 869 NP_001119584 19 869 NP_001119586 19 869 NP_001263625 19 869 NP_001119590 19 869 NP_001263690 19 869 NP_001119585 19 869 NP_001263624 19 869 NP_001119588 19 869 NP_001119587 19 869 NP_001119589 19 869 NP_001263627 18 1935 NP_001263628 18 1935 NP_001263626 18 1935 NP_001230133 17 3301 NP_001135936 17 3301 NP_057665 17 3301 NP_064506 17 4312 NP_055483 15 9605 NP_038464 15 9605 NP_995314 15 9605 NP_006815 15 9605 NP_001153408 15 9605 NP_001626 15 9605 NP_647477 15 9605 XP_006715753 15 9605 XP_006715752 15 9605 XP_006712264 15 9605 XP_006712263 15 9605 XP_005246254 15 9605 XP_005246253 15 9605 XP_005246252 15 9605 XP_006711970 15 9605 XP_006711969 15 9605 XP_005246249 15 9605 XP_006711968 15 9605 XP_006711967 15 9605>NP_000537 Length = 393 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 158 RAMAIYKQS 166>NP_001263689 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 119 RAMAIYKQS 127>NP_001119584 Length = 393 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 158 RAMAIYKQS 166>NP_001119586 Length = 341 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 158 RAMAIYKQS 166>NP_001263625 Length = 302 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 119 RAMAIYKQS 127>NP_001119590 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 119 RAMAIYKQS 127>NP_001263690 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 119 RAMAIYKQS 127>NP_001119585 Length = 346 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 158 RAMAIYKQS 166>NP_001263624 Length = 307 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 119 RAMAIYKQS 127>NP_001119588 Length = 209 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 26 RAMAIYKQS 34>NP_001119587 Length = 261 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 26 RAMAIYKQS 34>NP_001119589 Length = 214 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R MAIYKQS Sbjct: 26 RAMAIYKQS 34>NP_001263627 Length = 182 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 MAIYKQS 9 MAIYKQS Sbjct: 1 MAIYKQS 7>NP_001263628 Length = 187 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 MAIYKQS 9 MAIYKQS Sbjct: 1 MAIYKQS 7>NP_001263626 Length = 234 Score = 17.7 bits (34), Expect = 1935 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 MAIYKQS 9 MAIYKQS Sbjct: 1 MAIYKQS 7>NP_001230133 Length = 296 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDMAIYKQ 8 RD+A+Y Q Sbjct: 124 RDLAVYNQ 131>NP_001135936 Length = 296 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDMAIYKQ 8 RD+A+Y Q Sbjct: 124 RDLAVYNQ 131>NP_057665 Length = 431 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 RDMAIYKQ 8 RD+A+Y Q Sbjct: 124 RDLAVYNQ 131>NP_064506 Length = 1516 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 RDMAIYKQS 9 +++AIYKQ+ Sbjct: 72 QELAIYKQT 80>NP_055483 Length = 1949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1580 EMAIYKK 1586>NP_038464 Length = 1128 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYKQS 9 A+YKQS Sbjct: 1118 AVYKQS 1123>NP_995314 Length = 1134 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYKQS 9 A+YKQS Sbjct: 1124 AVYKQS 1129>NP_006815 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R+M+ Y+Q+ Sbjct: 104 REMSFYRQA 112>NP_001153408 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RDMAIYKQS 9 R+M+ Y+Q+ Sbjct: 159 REMSFYRQA 167>NP_001626 Length = 695 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RDMAIYK 7 RD+A YK Sbjct: 677 RDLATYK 683>NP_647477 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RDMAIYK 7 RD+A YK Sbjct: 635 RDLATYK 641>XP_006715753 Length = 819 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RDMAIYK 7 RD+A YK Sbjct: 801 RDLATYK 807>XP_006715752 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 RDMAIYK 7 RD+A YK Sbjct: 1207 RDLATYK 1213>XP_006712264 Length = 1126 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYKQS 9 A+YKQS Sbjct: 1116 AVYKQS 1121>XP_006712263 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AIYKQS 9 A+YKQS Sbjct: 1122 AVYKQS 1127>XP_005246254 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 578 EMAIYKK 584>XP_005246253 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 669 EMAIYKK 675>XP_005246252 Length = 1850 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1481 EMAIYKK 1487>XP_006711970 Length = 1948 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1579 EMAIYKK 1585>XP_006711969 Length = 1949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1580 EMAIYKK 1586>XP_005246249 Length = 1949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1580 EMAIYKK 1586>XP_006711968 Length = 1949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1580 EMAIYKK 1586>XP_006711967 Length = 1949 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DMAIYKQ 8 +MAIYK+ Sbjct: 1580 EMAIYKK 1586Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 394,968 Number of extensions: 671 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |