Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 665 NP_001004758 17 3301 NP_000681 16 5631 NP_000683 16 5631 NP_001074318 15 9605 NP_001273538 15 9605 NP_115507 15 9605 NP_006471 15 9605 NP_001258709 15 9605 NP_055629 15 9605 NP_001258708 15 9605 NP_001258710 15 9605 XP_006715637 15 9605 XP_005267214 15 9605 XP_005267213 15 9605 XP_006715636 15 9605 XP_005267212 15 9605 XP_005267211 15 9605 XP_005265851 15 9605 XP_006713494 15 9605 XP_005265676 15 9605 XP_005265675 15 9605>NP_115927 Length = 1321 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 RARLLNRVQ 9 RARLLNRV+ Sbjct: 698 RARLLNRVR 706>NP_001004758 Length = 323 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 RARLLNRVQ 9 R R+LNR+Q Sbjct: 307 RKRILNRLQ 315>NP_000681 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RARLLNRV 8 R RLLNR+ Sbjct: 101 RGRLLNRL 108>NP_000683 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 RARLLNRV 8 R RLLNR+ Sbjct: 101 RGRLLNRL 108>NP_001074318 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 RLL+RVQ Sbjct: 11 RLLSRVQ 17>NP_001273538 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 682 QLLNRIQ 688>NP_115507 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 847 QLLNRIQ 853>NP_006471 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 504 LLNRVQ 509>NP_001258709 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 338 LLNRVQ 343>NP_055629 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 376 LLNRVQ 381>NP_001258708 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 429 LLNRVQ 434>NP_001258710 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 337 LLNRVQ 342>XP_006715637 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 682 QLLNRIQ 688>XP_005267214 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 682 QLLNRIQ 688>XP_005267213 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 847 QLLNRIQ 853>XP_006715636 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 847 QLLNRIQ 853>XP_005267212 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 847 QLLNRIQ 853>XP_005267211 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RLLNRVQ 9 +LLNR+Q Sbjct: 847 QLLNRIQ 853>XP_005265851 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 505 LLNRVQ 510>XP_006713494 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 327 LLNRVQ 332>XP_005265676 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 327 LLNRVQ 332>XP_005265675 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LLNRVQ 9 LLNRVQ Sbjct: 397 LLNRVQ 402Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.142 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,622 Number of extensions: 468 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |