Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1935 NP_001263689 18 1935 NP_001119584 18 1935 NP_001119586 18 1935 NP_001263625 18 1935 NP_001119590 18 1935 NP_001263690 18 1935 NP_001119585 18 1935 NP_001263624 18 1935 NP_001119588 18 1935 NP_001119587 18 1935 NP_001119589 18 1935 NP_031392 17 2528 NP_001007268 17 2528 NP_001182570 17 2528 XP_005246450 17 2528 XP_005246449 17 2528 NP_001005497 17 3301 NP_001120936 17 4312 NP_006030 16 5631 NP_859061 16 5631 NP_001005275 16 5631 NP_001001674 16 5631 NP_001004758 16 5631 NP_079042 15 9605 NP_075556 15 9605 XP_006723676 15 9605 XP_006723675 15 9605 XP_006723673 15 9605>NP_000537 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 158 RAMAIYKQS 166>NP_001263689 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 119 RAMAIYKQS 127>NP_001119584 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 158 RAMAIYKQS 166>NP_001119586 Length = 341 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 158 RAMAIYKQS 166>NP_001263625 Length = 302 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 119 RAMAIYKQS 127>NP_001119590 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 119 RAMAIYKQS 127>NP_001263690 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 119 RAMAIYKQS 127>NP_001119585 Length = 346 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 158 RAMAIYKQS 166>NP_001263624 Length = 307 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 119 RAMAIYKQS 127>NP_001119588 Length = 209 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 26 RAMAIYKQS 34>NP_001119587 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 26 RAMAIYKQS 34>NP_001119589 Length = 214 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 RAMAI KQS Sbjct: 26 RAMAIYKQS 34>NP_031392 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RAMAICKQ 8 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001007268 Length = 1324 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RAMAICKQ 8 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001182570 Length = 1461 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RAMAICKQ 8 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>XP_005246450 Length = 1461 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RAMAICKQ 8 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>XP_005246449 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 RAMAICKQ 8 +AM++CKQ Sbjct: 638 KAMSLCKQ 645>NP_001005497 Length = 312 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RAMAICK 7 R MAICK Sbjct: 120 RCMAICK 126>NP_001120936 Length = 3925 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 RAMAICKQS 9 +A+ +CK+S Sbjct: 2734 KALGVCKES 2742>NP_006030 Length = 1479 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 RAMAICKQS 9 RA IC+QS Sbjct: 639 RARYICRQS 647>NP_859061 Length = 429 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 RAMAICKQS 9 R+ +CKQS Sbjct: 346 RSCPVCKQS 354>NP_001005275 Length = 344 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RAMAICK 7 R MAICK Sbjct: 150 RYMAICK 156>NP_001001674 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 RAMAICK 7 R MAICK Sbjct: 122 RYMAICK 128>NP_001004758 Length = 323 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 RAMAICK 7 RA+AIC+ Sbjct: 130 RALAICR 136>NP_079042 Length = 323 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 RAMAICK 7 RA+A+C+ Sbjct: 146 RALAVCE 152>NP_075556 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RAMAICKQS 9 R +CKQS Sbjct: 1666 RRRRVCKQS 1674>XP_006723676 Length = 1385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RAMAICKQS 9 R +CKQS Sbjct: 1342 RRRRVCKQS 1350>XP_006723675 Length = 1623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RAMAICKQS 9 R +CKQS Sbjct: 1580 RRRRVCKQS 1588>XP_006723673 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 RAMAICKQS 9 R +CKQS Sbjct: 1666 RRRRVCKQS 1674Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.121 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 565,950 Number of extensions: 477 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |