Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 19 869 NP_037506 16 5631 NP_001155901 16 5631 NP_054859 15 9605 NP_001120679 15 9605 NP_954635 15 9605 NP_000679 15 9605 NP_001361 15 9605 XP_005265002 15 9605 XP_005265001 15 9605 XP_006712620 15 9605 XP_005246688 15 9605 XP_005246689 15 9605 XP_006712019 15 9605>NP_055365 Length = 1032 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QYSQSLIAK 9 QYSQSLI K Sbjct: 408 QYSQSLIEK 416>NP_037506 Length = 868 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QYSQSLIAK 9 +Y QS++AK Sbjct: 257 EYHQSILAK 265>NP_001155901 Length = 873 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QYSQSLIAK 9 +Y QS++AK Sbjct: 262 EYHQSILAK 270>NP_054859 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YSQSLIA 8 YSQ LIA Sbjct: 349 YSQDLIA 355>NP_001120679 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YSQSLIA 8 YSQ LIA Sbjct: 349 YSQDLIA 355>NP_954635 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YSQSLIAK 9 YS SLI K Sbjct: 235 YSDSLITK 242>NP_000679 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YSQSLIAK 9 YS SLI K Sbjct: 235 YSDSLITK 242>NP_001361 Length = 4158 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QYSQSLI 7 QY QSLI Sbjct: 3012 QYRQSLI 3018>XP_005265002 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YSQSLIAK 9 YS SLI K Sbjct: 235 YSDSLITK 242>XP_005265001 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YSQSLIAK 9 YS SLI K Sbjct: 252 YSDSLITK 259>XP_006712620 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YSQSLIA 8 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_005246688 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YSQSLIA 8 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_005246689 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YSQSLIA 8 YSQ LIA Sbjct: 349 YSQDLIA 355>XP_006712019 Length = 4158 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QYSQSLI 7 QY QSLI Sbjct: 3012 QYRQSLI 3018Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.116 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 317,845 Number of extensions: 330 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |