Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 20 299 NP_004561 20 299 NP_001275703 20 299 XP_005253450 20 299 XP_006719151 20 299 NP_064502 18 1135 NP_612201 17 2528 XP_006721798 17 2528 XP_006721797 17 2528 XP_006721796 17 2528 NP_848658 17 3301 XP_006716025 17 3301 XP_006716024 17 3301 NP_001074001 16 5631 NP_001122306 16 7355 NP_000524 16 7355 NP_955772 16 7355 NP_116244 16 7355 NP_005698 16 7355 XP_005254165 16 7355 NP_001106849 15 9605 NP_060663 15 9605 NP_065194 15 9605 NP_056144 15 9605 NP_036346 15 9605 NP_001153626 15 9605 NP_001258769 15 9605 NP_055506 15 9605 NP_008845 15 9605 NP_079439 15 9605 XP_006722774 15 9605 XP_005259895 15 9605 XP_005259894 15 9605 XP_006718010 15 9605 XP_006713821 15 9605 NP_001005289 15 9605>NP_001275701 Length = 1486 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 YLIQVTHS Sbjct: 1262 YLIQVTHS 1269>NP_004561 Length = 1445 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 YLIQVTHS Sbjct: 1221 YLIQVTHS 1228>NP_001275703 Length = 1264 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 YLIQVTHS Sbjct: 1040 YLIQVTHS 1047>XP_005253450 Length = 1486 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 YLIQVTHS Sbjct: 1262 YLIQVTHS 1269>XP_006719151 Length = 1486 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 YLIQVTHS Sbjct: 1262 YLIQVTHS 1269>NP_064502 Length = 1176 Score = 18.5 bits (36), Expect = 1135 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QYLIQVTH 8 QYL++VTH Sbjct: 900 QYLMEVTH 907>NP_612201 Length = 404 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QYLIQVTH 8 Q+++QVTH Sbjct: 186 QFVLQVTH 193>XP_006721798 Length = 268 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QYLIQVTH 8 Q+++QVTH Sbjct: 50 QFVLQVTH 57>XP_006721797 Length = 362 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QYLIQVTH 8 Q+++QVTH Sbjct: 144 QFVLQVTH 151>XP_006721796 Length = 396 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QYLIQVTH 8 Q+++QVTH Sbjct: 178 QFVLQVTH 185>NP_848658 Length = 920 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 QYL+ + HS Sbjct: 749 QYLLPIVHS 757>XP_006716025 Length = 920 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 QYL+ + HS Sbjct: 749 QYLLPIVHS 757>XP_006716024 Length = 920 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 QYL+ + HS Sbjct: 749 QYLLPIVHS 757>NP_001074001 Length = 1100 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 1/9 (11%) Query: 1 QYLIQVTHS 9 QYL QVTHS Sbjct: 1059 QYL-QVTHS 1066>NP_001122306 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 +YLI V H+ Sbjct: 59 EYLINVIHA 67>NP_000524 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 +YLI V H+ Sbjct: 59 EYLINVIHA 67>NP_955772 Length = 242 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 +YLI V H+ Sbjct: 59 EYLINVIHA 67>NP_116244 Length = 352 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YLIQVTHS 9 +LI+V+HS Sbjct: 56 FLIRVSHS 63>NP_005698 Length = 485 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QYLIQVTHS 9 QY +Q HS Sbjct: 429 QYYLQAEHS 437>XP_005254165 Length = 406 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QYLIQVTHS 9 QY +Q HS Sbjct: 350 QYYLQAEHS 358>NP_001106849 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QYLIQVT 7 QY+IQ+T Sbjct: 172 QYVIQLT 178>NP_060663 Length = 1268 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QYLIQVT 7 QY+IQ+T Sbjct: 172 QYVIQLT 178>NP_065194 Length = 1819 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 QYLIQVTH 8 +++IQV H Sbjct: 551 EFMIQVNH 558>NP_056144 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YL+ V HS Sbjct: 293 YLVTVMHS 300>NP_036346 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YLI+ HS Sbjct: 151 YLIETLHS 158>NP_001153626 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YLI+ HS Sbjct: 23 YLIETLHS 30>NP_001258769 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QYLIQVTH 8 +YL Q TH Sbjct: 17 EYLTQQTH 24>NP_055506 Length = 1485 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YLIQVTH 8 +LIQ TH Sbjct: 1371 HLIQTTH 1377>NP_008845 Length = 459 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 Q IQ+TH+ Sbjct: 261 QCAIQITHA 269>NP_079439 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 +YL QV H+ Sbjct: 440 EYLEQVVHA 448>XP_006722774 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YL+ V HS Sbjct: 332 YLVTVMHS 339>XP_005259895 Length = 624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YL+ V HS Sbjct: 304 YLVTVMHS 311>XP_005259894 Length = 651 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YL+ V HS Sbjct: 332 YLVTVMHS 339>XP_006718010 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QYLIQVTH 8 +YL Q TH Sbjct: 17 EYLTQQTH 24>XP_006713821 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QYLIQVTHS 9 +YL QV H+ Sbjct: 290 EYLEQVVHA 298>NP_001005289 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 YLIQVTHS 9 YLI V HS Sbjct: 55 YLIVVEHS 62Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.129 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 568,400 Number of extensions: 1178 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |