Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 20 509 NP_996844 19 665 XP_005254439 19 665 XP_006720568 19 665 XP_005254438 19 665 NP_002335 19 665 NP_001244211 17 3301 NP_078807 17 3301 NP_001240744 17 3301 NP_001240745 17 3301 NP_001244210 17 3301 NP_689596 17 3301 NP_001098047 17 3301 NP_060456 17 3301 XP_005256766 17 3301 XP_006716723 17 3301 XP_006716722 17 3301 XP_006716721 17 3301 NP_000085 16 5631 NP_071373 16 7355 XP_005266015 16 7355 NP_150597 16 7355 NP_056110 15 9605 NP_056537 15 9605 NP_036423 15 9605 XP_005258159 15 9605 XP_006722384 15 9605 XP_006719768 15 9605 XP_005252742 15 9605>NP_004295 Length = 1620 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV VKTLPE Sbjct: 1146 QVAVKTLPE 1154>NP_996844 Length = 803 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV +KTLPE Sbjct: 479 QVAIKTLPE 487>XP_005254439 Length = 475 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV +KTLPE Sbjct: 151 QVAIKTLPE 159>XP_006720568 Length = 771 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV +KTLPE Sbjct: 447 QVAIKTLPE 455>XP_005254438 Length = 819 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV +KTLPE Sbjct: 495 QVAIKTLPE 503>NP_002335 Length = 864 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVVVKTLPE 9 QV +KTLPE Sbjct: 540 QVAIKTLPE 548>NP_001244211 Length = 249 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 111 VVVKLLPE 118>NP_078807 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>NP_001240744 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>NP_001240745 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>NP_001244210 Length = 603 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 111 VVVKLLPE 118>NP_689596 Length = 885 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 111 VVVKLLPE 118>NP_001098047 Length = 448 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKDLPE 43>NP_060456 Length = 448 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKDLPE 43>XP_005256766 Length = 350 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKDLPE 43>XP_006716723 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>XP_006716722 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>XP_006716721 Length = 445 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVVK LPE Sbjct: 36 VVVKELPE 43>NP_000085 Length = 2944 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVVKTLPE 9 VVV+T PE Sbjct: 767 VVVRTAPE 774>NP_071373 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVVKTLP 8 +V+KTLP Sbjct: 278 LVIKTLP 284>XP_005266015 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVVKTLP 8 +V+KTLP Sbjct: 278 LVIKTLP 284>NP_150597 Length = 103 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 VVKTLPE 9 ++KTLP+ Sbjct: 76 IIKTLPQ 82>NP_056110 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QVVVKTLP 8 QV+V+ LP Sbjct: 1478 QVIVEVLP 1485>NP_056537 Length = 217 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVVVKTLPE 9 QVV+KT E Sbjct: 45 QVVIKTQTE 53>NP_036423 Length = 2120 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVVVKTLPE 9 QVV+K PE Sbjct: 1185 QVVLKGCPE 1193>XP_005258159 Length = 1817 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QVVVKTLP 8 QV+V+ LP Sbjct: 1290 QVIVEVLP 1297>XP_006722384 Length = 1877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QVVVKTLP 8 QV+V+ LP Sbjct: 1350 QVIVEVLP 1357>XP_006719768 Length = 2120 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVVVKTLPE 9 QVV+K PE Sbjct: 1185 QVVLKGCPE 1193>XP_005252742 Length = 217 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVVVKTLPE 9 QVV+KT E Sbjct: 45 QVVIKTQTE 53Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.130 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 524,606 Number of extensions: 733 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |