Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006501 17 3301 NP_003974 17 3301 NP_001070253 17 3301 NP_008970 17 3301 XP_005267344 17 3301 NP_055726 16 5631 NP_060063 16 5631 NP_942595 16 5631 NP_058641 16 5631 XP_005263174 16 5631 NP_001119577 16 7355 NP_001119578 16 7355 NP_078858 16 7355 NP_001278232 16 7355 NP_001278214 16 7355 NP_001018081 16 7355 NP_001137420 16 7355 NP_116133 16 7355 NP_078904 16 7355 NP_001182412 16 7355 XP_006720365 16 7355 XP_005250261 16 7355 XP_005249511 16 7355 NP_690852 16 7355 NP_003256 15 9605 NP_002604 15 9605 NP_001248745 15 9605 NP_001171696 15 9605 NP_919431 15 9605 NP_699177 15 9605 XP_006724525 15 9605 XP_005255413 15 9605 XP_006714357 15 9605 XP_005275825 15 9605 XP_003960932 15 9605 XP_006710060 15 9605>NP_006501 Length = 513 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 YFSLSY 9 YFSLSY Sbjct: 473 YFSLSY 478>NP_003974 Length = 515 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSYFSLSY 9 ++YFS SY Sbjct: 390 INYFSFSY 397>NP_001070253 Length = 515 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSYFSLSY 9 ++YFS SY Sbjct: 390 INYFSFSY 397>NP_008970 Length = 1174 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 +V+YFSL Y Sbjct: 60 EVTYFSLWY 68>XP_005267344 Length = 1174 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 +V+YFSL Y Sbjct: 60 EVTYFSLWY 68>NP_055726 Length = 961 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QVSYFS 6 QVSYFS Sbjct: 306 QVSYFS 311>NP_060063 Length = 662 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVSYFSLSY 9 QVSYF+ + Sbjct: 310 QVSYFAFKF 318>NP_942595 Length = 1161 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVSYFSLSY 9 QVSYF+ + Sbjct: 310 QVSYFAFKF 318>NP_058641 Length = 291 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SYFSLSY 9 SYF+L+Y Sbjct: 70 SYFNLNY 76>XP_005263174 Length = 1124 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVSYFSLSY 9 QVSYF+ + Sbjct: 310 QVSYFAFKF 318>NP_001119577 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VSYFSLSY 9 ++Y+S SY Sbjct: 382 INYYSFSY 389>NP_001119578 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VSYFSLSY 9 ++Y+S SY Sbjct: 382 INYYSFSY 389>NP_078858 Length = 4981 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SYFSLS 8 SYFSLS Sbjct: 3556 SYFSLS 3561>NP_001278232 Length = 4983 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SYFSLS 8 SYFSLS Sbjct: 3558 SYFSLS 3563>NP_001278214 Length = 4982 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SYFSLS 8 SYFSLS Sbjct: 3558 SYFSLS 3563>NP_001018081 Length = 1309 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 +++YF L+Y Sbjct: 379 ELTYFGLAY 387>NP_001137420 Length = 248 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SYFSLSY 9 ++FSLSY Sbjct: 213 AFFSLSY 219>NP_116133 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SYFSLSY 9 ++FSLSY Sbjct: 195 AFFSLSY 201>NP_078904 Length = 714 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SYFSLS 8 SYFSLS Sbjct: 401 SYFSLS 406>NP_001182412 Length = 714 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SYFSLS 8 SYFSLS Sbjct: 401 SYFSLS 406>XP_006720365 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VSYFSLSY 9 ++Y+S SY Sbjct: 382 INYYSFSY 389>XP_005250261 Length = 495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QVSYFSLS 8 +++YFSLS Sbjct: 401 ELAYFSLS 408>XP_005249511 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SYFSLSY 9 ++FSLSY Sbjct: 195 AFFSLSY 201>NP_690852 Length = 647 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QVSYFSLS 8 +++YFSLS Sbjct: 553 ELAYFSLS 560>NP_003256 Length = 904 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QVSYFSLSY 9 Q+ YF L Y Sbjct: 299 QLEYFFLEY 307>NP_002604 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 156 YFGLSY 161>NP_001248745 Length = 454 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 156 YFGLSY 161>NP_001171696 Length = 645 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 Q+SY ++SY Sbjct: 307 QMSYGTMSY 315>NP_919431 Length = 1717 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVSYFSLSY 9 Q+SY LS+ Sbjct: 761 QLSYLGLSF 769>NP_699177 Length = 799 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 Q+SY ++SY Sbjct: 398 QMSYGTMSY 406>XP_006724525 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVSYFSLSY 9 Q+SY ++SY Sbjct: 33 QMSYGTMSY 41>XP_005255413 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 129 YFGLSY 134>XP_006714357 Length = 904 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QVSYFSLSY 9 Q+ YF L Y Sbjct: 299 QLEYFFLEY 307>XP_005275825 Length = 218 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 129 YFGLSY 134>XP_003960932 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 129 YFGLSY 134>XP_006710060 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 YFSLSY 9 YF LSY Sbjct: 129 YFGLSY 134Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.129 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 449,582 Number of extensions: 527 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |