Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001156685 18 1135 NP_000133 18 1135 XP_006713936 18 1135 XP_006713935 18 1135 XP_006713934 18 1135 XP_006713933 18 1135 NP_075254 17 3301 XP_006713932 17 4312 XP_006713931 17 4312 NP_004230 16 5631 NP_005286 16 5631 XP_005268271 16 5631 XP_005268270 16 5631 XP_006720384 16 5631 XP_006716001 16 7355 NP_000836 16 7355 NP_001107604 15 9605 XP_006712765 15 9605 XP_006712764 15 9605 XP_005246844 15 9605 XP_006712763 15 9605 XP_006712762 15 9605 XP_006712761 15 9605 XP_005275790 15 9605>NP_001156685 Length = 808 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 424 QVSLESNAS 432>NP_000133 Length = 806 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 422 QVSLESNAS 430>XP_006713936 Length = 807 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 422 QVSLESNAS 430>XP_006713935 Length = 807 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 423 QVSLESNAS 431>XP_006713934 Length = 809 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 424 QVSLESNAS 432>XP_006713933 Length = 810 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 QVSLESN S Sbjct: 425 QVSLESNAS 433>NP_075254 Length = 694 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QVSLESNTS 9 +VSLESN S Sbjct: 310 KVSLESNAS 318>XP_006713932 Length = 810 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VSLESNTS 9 VSLESN S Sbjct: 427 VSLESNAS 434>XP_006713931 Length = 811 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VSLESNTS 9 VSLESN S Sbjct: 427 VSLESNAS 434>NP_004230 Length = 1979 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVSLESNT 8 Q+SLE NT Sbjct: 702 QLSLEKNT 709>NP_005286 Length = 433 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VSLESNTS 9 +SLESNT+ Sbjct: 105 LSLESNTA 112>XP_005268271 Length = 1537 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVSLESNT 8 Q+SLE NT Sbjct: 260 QLSLEKNT 267>XP_005268270 Length = 1950 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVSLESNT 8 Q+SLE NT Sbjct: 673 QLSLEKNT 680>XP_006720384 Length = 1978 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVSLESNT 8 Q+SLE NT Sbjct: 701 QLSLEKNT 708>XP_006716001 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLESNTS 9 SLE+NTS Sbjct: 888 SLETNTS 894>NP_000836 Length = 908 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLESNTS 9 SLE+NTS Sbjct: 888 SLETNTS 894>NP_001107604 Length = 2694 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 986 QVSLEKN 992>XP_006712765 Length = 2679 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 958 QVSLEKN 964>XP_006712764 Length = 2697 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 1015 QVSLEKN 1021>XP_005246844 Length = 2707 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 986 QVSLEKN 992>XP_006712763 Length = 2716 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 1015 QVSLEKN 1021>XP_006712762 Length = 2723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 1015 QVSLEKN 1021>XP_006712761 Length = 2736 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVSLESN 7 QVSLE N Sbjct: 1015 QVSLEKN 1021>XP_005275790 Length = 207 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QVSLESNT 8 QVSL NT Sbjct: 104 QVSLSENT 111Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.277 0.0942 0.199 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 338,175 Number of extensions: 317 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |