Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001002021 17 4312 NP_002617 17 4312 XP_005261194 17 4312 XP_005261193 17 4312 XP_005261192 17 4312 XP_006724075 17 4312 XP_006724074 17 4312 NP_001661 16 5631 XP_006724314 16 5631 XP_006724313 16 5631 XP_006724312 16 5631 XP_006724311 16 5631 XP_006724310 16 5631 XP_006724309 16 5631 XP_005261301 16 5631 XP_006724308 16 5631 XP_005261300 16 5631 XP_006724307 16 5631 XP_005261299 16 5631 XP_006724306 16 5631 NP_071913 16 7355 NP_001035059 16 7355 NP_001265168 16 7355 NP_001265165 16 7355 NP_002556 16 7355 NP_116170 16 7355 NP_008837 16 7355 NP_001265167 16 7355 NP_000594 15 9605 NP_955373 15 9605 NP_001036009 15 9605 NP_001036010 15 9605 NP_003564 15 9605 XP_006723268 15 9605 XP_005259506 15 9605 XP_006723267 15 9605 XP_006722332 15 9605 XP_006716064 15 9605 XP_006716063 15 9605>NP_001002021 Length = 830 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 419 EATQLRGGS 427>NP_002617 Length = 780 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 369 EATQLRGGS 377>XP_005261194 Length = 751 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 340 EATQLRGGS 348>XP_005261193 Length = 774 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 363 EATQLRGGS 371>XP_005261192 Length = 803 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 392 EATQLRGGS 400>XP_006724075 Length = 830 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 419 EATQLRGGS 427>XP_006724074 Length = 853 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 + QLRGGS Sbjct: 442 EATQLRGGS 450>NP_001661 Length = 962 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724314 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724313 Length = 661 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724312 Length = 667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724311 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 332 RVRQLRG 338>XP_006724310 Length = 899 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 332 RVRQLRG 338>XP_006724309 Length = 922 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 313 RVRQLRG 319>XP_005261301 Length = 929 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724308 Length = 935 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_005261300 Length = 956 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724307 Length = 986 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_005261299 Length = 998 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>XP_006724306 Length = 1004 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QVRQLRG 7 +VRQLRG Sbjct: 395 RVRQLRG 401>NP_071913 Length = 562 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVRQLRGGS 9 Q RQL GG+ Sbjct: 394 QDRQLEGGA 402>NP_001035059 Length = 533 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 498 QLRQDRGG 505>NP_001265168 Length = 509 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 474 QLRQDRGG 481>NP_001265165 Length = 533 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 498 QLRQDRGG 505>NP_002556 Length = 365 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQL GG Sbjct: 316 QLRQLCGG 323>NP_116170 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 530 QLRQDRGG 537>NP_008837 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 530 QLRQDRGG 537>NP_001265167 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+RQ RGG Sbjct: 506 QLRQDRGG 513>NP_000594 Length = 1203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVRQLRG 7 Q RQLRG Sbjct: 1181 QERQLRG 1187>NP_955373 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QVRQLRGG 8 Q+R RGG Sbjct: 519 QIRDWRGG 526>NP_001036009 Length = 1624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RQLRGG 8 R+LRGG Sbjct: 291 RELRGG 296>NP_001036010 Length = 1557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RQLRGG 8 R+LRGG Sbjct: 224 RELRGG 229>NP_003564 Length = 1587 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RQLRGG 8 R+LRGG Sbjct: 254 RELRGG 259>XP_006723268 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QVRQLRGG 8 Q+R RGG Sbjct: 519 QIRDWRGG 526>XP_005259506 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QVRQLRGG 8 Q+R RGG Sbjct: 532 QIRDWRGG 539>XP_006723267 Length = 947 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 QVRQLRGG 8 Q+R RGG Sbjct: 546 QIRDWRGG 553>XP_006722332 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QVRQLRGG 8 Q+ Q+RGG Sbjct: 127 QLLQIRGG 134>XP_006716064 Length = 997 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVRQLRG 7 Q RQLRG Sbjct: 975 QERQLRG 981>XP_006716063 Length = 1203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QVRQLRG 7 Q RQLRG Sbjct: 1181 QERQLRG 1187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.137 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 638,953 Number of extensions: 997 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |