Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 20 299 NP_065916 17 3301 NP_001107869 17 3301 NP_000370 17 4312 NP_004516 16 5631 NP_037512 16 5631 NP_001076804 16 5631 XP_006712591 16 5631 XP_006712589 16 5631 NP_003473 16 7355 NP_002326 16 7355 NP_002327 16 7355 XP_006719679 16 7355 XP_005269219 16 7355 XP_006719678 16 7355 XP_006719677 16 7355 XP_006719141 16 7355 XP_005274051 16 7355 NP_001177766 15 9605 NP_001128512 15 9605 NP_004073 15 9605 NP_075408 15 9605 NP_001128513 15 9605 NP_001177765 15 9605 NP_473449 15 9605 NP_001140201 15 9605>NP_004251 Length = 1208 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QVQRAFMQG 9 +VQRAFMQG Sbjct: 755 RVQRAFMQG 763>NP_065916 Length = 1008 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 Q +R FMQG Sbjct: 417 QFKRGFMQG 425>NP_001107869 Length = 994 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 Q +R FMQG Sbjct: 417 QFKRGFMQG 425>NP_000370 Length = 1333 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QVQRAFMQG 9 QV+ AF+QG Sbjct: 1195 QVEGAFVQG 1203>NP_004516 Length = 4655 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVQRAFMQG 9 +++RAFM G Sbjct: 537 KLERAFMDG 545>NP_037512 Length = 907 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QRAFMQG 9 QRA++QG Sbjct: 726 QRAYLQG 732>NP_001076804 Length = 913 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QRAFMQG 9 QRA++QG Sbjct: 732 QRAYLQG 738>XP_006712591 Length = 3308 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVQRAFMQG 9 +++RAFM G Sbjct: 537 KLERAFMDG 545>XP_006712589 Length = 4660 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QVQRAFMQG 9 +++RAFM G Sbjct: 537 KLERAFMDG 545>NP_003473 Length = 5537 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VQRAFMQG 9 +QR F+QG Sbjct: 1921 LQRPFLQG 1928>NP_002326 Length = 1615 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 VQRAFMQG 9 + RAFM G Sbjct: 699 ISRAFMNG 706Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 ++ RAFM G Sbjct: 785 RIVRAFMDG 793>NP_002327 Length = 1613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 VQRAFMQG 9 + RAFM G Sbjct: 686 ISRAFMNG 693>XP_006719679 Length = 5536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VQRAFMQG 9 +QR F+QG Sbjct: 1920 LQRPFLQG 1927>XP_005269219 Length = 5537 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VQRAFMQG 9 +QR F+QG Sbjct: 1921 LQRPFLQG 1928>XP_006719678 Length = 5539 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VQRAFMQG 9 +QR F+QG Sbjct: 1923 LQRPFLQG 1930>XP_006719677 Length = 5540 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VQRAFMQG 9 +QR F+QG Sbjct: 1924 LQRPFLQG 1931>XP_006719141 Length = 1613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 VQRAFMQG 9 + RAFM G Sbjct: 686 ISRAFMNG 693>XP_005274051 Length = 1653 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 VQRAFMQG 9 + RAFM G Sbjct: 699 ISRAFMNG 706Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 ++ RAFM G Sbjct: 785 RIVRAFMDG 793>NP_001177766 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 761 RAFLQG 766>NP_001128512 Length = 1253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 748 RAFLQG 753>NP_004073 Length = 1278 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 768 RAFLQG 773>NP_075408 Length = 1144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 634 RAFLQG 639>NP_001128513 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 634 RAFLQG 639>NP_001177765 Length = 1236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAFMQG 9 RAF+QG Sbjct: 731 RAFLQG 736>NP_473449 Length = 279 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 QV+ A M+G Sbjct: 249 QVEHALMEG 257>NP_001140201 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVQRAFMQG 9 QV+ A M+G Sbjct: 239 QVEHALMEG 247Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 349,242 Number of extensions: 473 Number of successful extensions: 28 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |