Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 20 509 NP_005913 20 509 XP_005267046 20 509 XP_005267045 20 509 NP_055723 16 5631 NP_068761 16 5631 NP_951008 16 5631 NP_055907 16 7355 XP_005255242 16 7355 XP_005255241 16 7355 XP_005255240 16 7355 XP_005255239 16 7355 NP_000563 15 9605 NP_002949 15 9605 NP_001161076 15 9605 NP_065116 15 9605 NP_001073918 15 9605 XP_006718026 15 9605 XP_005270202 15 9605 XP_006718025 15 9605 XP_005270201 15 9605 XP_006717743 15 9605 NP_001005861 15 9605>NP_006715 Length = 1558 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 QVDN+LLVV Sbjct: 941 QVDNLLLVV 949>NP_005913 Length = 1608 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 QVDN+LLVV Sbjct: 941 QVDNLLLVV 949>XP_005267046 Length = 1554 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 QVDN+LLVV Sbjct: 941 QVDNLLLVV 949>XP_005267045 Length = 1604 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 QVDN+LLVV Sbjct: 941 QVDNLLLVV 949>NP_055723 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVDNILL 7 Q+DN+LL Sbjct: 522 QIDNLLL 528>NP_068761 Length = 1133 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVDNILL 7 QVDN++L Sbjct: 947 QVDNVIL 953>NP_951008 Length = 1086 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVDNILL 7 QVDN++L Sbjct: 947 QVDNVIL 953>NP_055907 Length = 3661 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVDNILLVV 9 Q+DNIL V Sbjct: 188 QLDNILAAV 196>XP_005255242 Length = 3609 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVDNILLVV 9 Q+DNIL V Sbjct: 136 QLDNILAAV 144>XP_005255241 Length = 3637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVDNILLVV 9 Q+DNIL V Sbjct: 136 QLDNILAAV 144>XP_005255240 Length = 3663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVDNILLVV 9 Q+DNIL V Sbjct: 162 QLDNILAAV 170>XP_005255239 Length = 3689 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVDNILLVV 9 Q+DNIL V Sbjct: 188 QLDNILAAV 196>NP_000563 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVDNILL 7 Q+DN+LL Sbjct: 60 QLDNLLL 66>NP_002949 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 QVDNIL 6 QVDN+L Sbjct: 126 QVDNVL 131>NP_001161076 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 554 RIENVVLVV 562>NP_065116 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 578 RIENVVLVV 586>NP_001073918 Length = 1060 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VDNILL 7 VDNILL Sbjct: 682 VDNILL 687>XP_006718026 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 464 RIENVVLVV 472>XP_005270202 Length = 618 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 530 RIENVVLVV 538>XP_006718025 Length = 645 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 578 RIENVVLVV 586>XP_005270201 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 QVDNILLVV 9 +++N++LVV Sbjct: 574 RIENVVLVV 582>XP_006717743 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VDNILL 7 VDNILL Sbjct: 712 VDNILL 717>NP_001005861 Length = 610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 QVDNIL 6 QVDN+L Sbjct: 126 QVDNVL 131Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.151 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 393,723 Number of extensions: 519 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |