Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_775782 17 4312 NP_055571 16 5631 NP_001008938 16 5631 NP_004295 16 7355 NP_001129157 16 7355 NP_996844 16 7355 XP_006722658 16 7355 XP_005259520 16 7355 XP_005259519 16 7355 XP_005254439 16 7355 XP_006720568 16 7355 XP_005254438 16 7355 NP_002335 16 7355 NP_005202 15 9605 NP_001275634 15 9605 NP_006288 15 9605 NP_079341 15 9605 NP_055288 15 9605 NP_001025226 15 9605 NP_001164 15 9605 XP_005267693 15 9605 XP_005267692 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QVAKVGDKT 9 Q AKVGDKT Sbjct: 692 QAAKVGDKT 700>NP_775782 Length = 589 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VAKVGDKT 9 V K GDKT Sbjct: 197 VCKAGDKT 204>NP_055571 Length = 1972 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VAKVGDK 8 V+K+GDK Sbjct: 866 VSKIGDK 872>NP_001008938 Length = 2032 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VAKVGDK 8 V+K+GDK Sbjct: 866 VSKIGDK 872>NP_004295 Length = 1620 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 1264 RVAKIGD 1270>NP_001129157 Length = 734 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 528 RVAKIGD 534>NP_996844 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 597 RVAKIGD 603>XP_006722658 Length = 240 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 QVA+ GD T Sbjct: 28 QVAREGDPT 36>XP_005259520 Length = 252 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 QVA+ GD T Sbjct: 28 QVAREGDPT 36>XP_005259519 Length = 279 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 QVA+ GD T Sbjct: 28 QVAREGDPT 36>XP_005254439 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 269 RVAKIGD 275>XP_006720568 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 565 RVAKIGD 571>XP_005254438 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 613 RVAKIGD 619>NP_002335 Length = 864 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QVAKVGD 7 +VAK+GD Sbjct: 658 RVAKIGD 664>NP_005202 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAKVGD 7 VAK+GD Sbjct: 791 VAKIGD 796>NP_001275634 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAKVGD 7 VAK+GD Sbjct: 791 VAKIGD 796>NP_006288 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 + AK G+KT Sbjct: 34 RAAKAGEKT 42>NP_079341 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VAKVGDKT 9 +AK GDK+ Sbjct: 1 MAKAGDKS 8>NP_055288 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VAKVGDK 8 VAK GDK Sbjct: 164 VAKPGDK 170>NP_001025226 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364>NP_001164 Length = 1501 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 + AK+ DKT Sbjct: 1355 EAAKIPDKT 1363>XP_005267693 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364>XP_005267692 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QVAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.122 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 433,238 Number of extensions: 404 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |