Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 22 103 NP_036462 22 103 NP_001243397 22 103 XP_005269721 22 103 NP_001078855 17 3301 NP_001092006 16 5631 NP_003472 16 5631 NP_055690 16 7355 NP_001073935 16 7355 NP_000949 15 9605 NP_060040 15 9605 NP_055919 15 9605 NP_443111 15 9605 NP_954660 15 9605 NP_001164274 15 9605 XP_006719279 15 9605 XP_006719278 15 9605 XP_005273907 15 9605 XP_005273906 15 9605 XP_005248384 15 9605 XP_005248383 15 9605 NP_001164275 15 9605 NP_001164279 15 9605>NP_001243398 Length = 1781 Score = 21.9 bits (45), Expect = 103 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTQVASKGH 9 QTQ+ASKGH Sbjct: 1622 QTQIASKGH 1630>NP_036462 Length = 2073 Score = 21.9 bits (45), Expect = 103 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTQVASKGH 9 QTQ+ASKGH Sbjct: 1914 QTQIASKGH 1922>NP_001243397 Length = 1890 Score = 21.9 bits (45), Expect = 103 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTQVASKGH 9 QTQ+ASKGH Sbjct: 1731 QTQIASKGH 1739>XP_005269721 Length = 2073 Score = 21.9 bits (45), Expect = 103 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTQVASKGH 9 QTQ+ASKGH Sbjct: 1914 QTQIASKGH 1922>NP_001078855 Length = 179 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QTQVASKGH 9 QTQV +GH Sbjct: 110 QTQVNPRGH 118>NP_001092006 Length = 858 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TQVASKGH 9 TQVA GH Sbjct: 375 TQVAKLGH 382>NP_003472 Length = 835 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TQVASKGH 9 TQVA GH Sbjct: 375 TQVAKLGH 382>NP_055690 Length = 1648 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QTQVASKGH 9 QT+V GH Sbjct: 226 QTEVVRSGH 234>NP_001073935 Length = 478 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QTQVASKGH 9 QTQ+ GH Sbjct: 340 QTQLGPSGH 348>NP_000949 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 236 VASRGH 241>NP_060040 Length = 1288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 850 VASRGH 855>NP_055919 Length = 1938 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 1872 VASRGH 1877>NP_443111 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>NP_954660 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>NP_001164274 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>XP_006719279 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>XP_006719278 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>XP_005273907 Length = 1930 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 1864 VASRGH 1869>XP_005273906 Length = 1932 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 1866 VASRGH 1871>XP_005248384 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 236 VASRGH 241>XP_005248383 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VASKGH 9 VAS+GH Sbjct: 236 VASRGH 241>NP_001164275 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12>NP_001164279 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QVASKG 8 QVASKG Sbjct: 7 QVASKG 12Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.110 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 423,716 Number of extensions: 641 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |