Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 19 665 NP_005913 19 665 XP_005267046 19 665 XP_005267045 19 665 XP_005272221 17 3301 NP_061829 17 3301 NP_003283 16 5631 NP_001271230 16 5631 NP_001271231 16 5631 NP_061155 16 5631 XP_006715810 16 5631 XP_006715809 16 5631 XP_005245528 16 5631 NP_003631 16 7355 NP_892006 16 7355 NP_149062 16 7355 NP_005637 16 7355 NP_060838 16 7355 XP_005252342 16 7355 XP_006715574 16 7355 XP_006715488 16 7355 XP_006715487 16 7355 XP_006715486 16 7355 XP_006715485 16 7355 XP_006715484 16 7355 XP_006715483 16 7355 XP_006715482 16 7355 XP_006715481 16 7355 XP_006715480 16 7355 XP_006715479 16 7355 XP_006715478 16 7355 XP_006715477 16 7355 XP_006715476 16 7355 XP_006715475 16 7355 XP_006715474 16 7355 XP_006715473 16 7355 XP_006715472 16 7355 XP_006715471 16 7355 XP_006715470 16 7355 XP_005273291 16 7355 NP_001106849 15 9605 NP_060663 15 9605 NP_057226 15 9605>NP_006715 Length = 1558 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTLISQSKD 9 +TLISQSKD Sbjct: 1228 RTLISQSKD 1236>NP_005913 Length = 1608 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTLISQSKD 9 +TLISQSKD Sbjct: 1278 RTLISQSKD 1286>XP_005267046 Length = 1554 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTLISQSKD 9 +TLISQSKD Sbjct: 1224 RTLISQSKD 1232>XP_005267045 Length = 1604 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QTLISQSKD 9 +TLISQSKD Sbjct: 1274 RTLISQSKD 1282>XP_005272221 Length = 222 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQS D Sbjct: 101 KTLVSQSND 109>NP_061829 Length = 168 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQS D Sbjct: 101 KTLVSQSND 109>NP_003283 Length = 2363 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QTLISQSKD 9 Q L+SQ KD Sbjct: 1340 QHLVSQQKD 1348>NP_001271230 Length = 1087 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQ +D Sbjct: 1033 ETLVSQCRD 1041>NP_001271231 Length = 1086 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQ +D Sbjct: 1032 ETLVSQCRD 1040>NP_061155 Length = 1124 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQ +D Sbjct: 1070 ETLVSQCRD 1078>XP_006715810 Length = 1105 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQ +D Sbjct: 1051 ETLVSQCRD 1059>XP_006715809 Length = 1142 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 +TL+SQ +D Sbjct: 1088 ETLVSQCRD 1096>XP_005245528 Length = 2439 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QTLISQSKD 9 Q L+SQ KD Sbjct: 1416 QHLVSQQKD 1424>NP_003631 Length = 1332 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QTLISQSKD 9 QTLI +KD Sbjct: 131 QTLIMMTKD 139>NP_892006 Length = 8797 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5570 QTLLEESKE 5578>NP_149062 Length = 8749 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5499 QTLLEESKE 5507>NP_005637 Length = 1621 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 + L+SQS+D Sbjct: 7 EALLSQSRD 15>NP_060838 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QT+ S+SKD Sbjct: 249 QTIKSKSKD 257>XP_005252342 Length = 1218 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QTLISQSKD 9 QTLI +KD Sbjct: 17 QTLIMMTKD 25>XP_006715574 Length = 336 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QT+ S+SKD Sbjct: 45 QTIKSKSKD 53>XP_006715488 Length = 8721 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715487 Length = 8744 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715486 Length = 8758 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715485 Length = 8793 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5524 QTLLEESKE 5532>XP_006715484 Length = 8794 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5525 QTLLEESKE 5533>XP_006715483 Length = 8795 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715482 Length = 8797 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5570 QTLLEESKE 5578>XP_006715481 Length = 8799 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5530 QTLLEESKE 5538>XP_006715480 Length = 8799 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715479 Length = 8804 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715478 Length = 8809 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715477 Length = 8822 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5553 QTLLEESKE 5561>XP_006715476 Length = 8823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715475 Length = 8827 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715474 Length = 8829 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5560 QTLLEESKE 5568>XP_006715473 Length = 8832 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715472 Length = 8839 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5570 QTLLEESKE 5578>XP_006715471 Length = 8842 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_006715470 Length = 8846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 QTL+ +SK+ Sbjct: 5577 QTLLEESKE 5585>XP_005273291 Length = 1620 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTLISQSKD 9 + L+SQS+D Sbjct: 7 EALLSQSRD 15>NP_001106849 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QTLISQSK 8 QTL+SQ K Sbjct: 625 QTLLSQLK 632>NP_060663 Length = 1268 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QTLISQSK 8 QTL+SQ K Sbjct: 625 QTLLSQLK 632>NP_057226 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LISQSKD 9 LIS+SKD Sbjct: 79 LISRSKD 85Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.111 0.253 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 367,386 Number of extensions: 635 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |