Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_005712 16 7355 NP_006288 15 9605 NP_852468 15 9605 NP_598395 15 9605 NP_001025226 15 9605 NP_001164 15 9605 NP_001192246 15 9605 NP_006678 15 9605 XP_005267693 15 9605 XP_005267692 15 9605 NP_892015 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QTAKVGDKT 9 Q AKVGDKT Sbjct: 692 QAAKVGDKT 700>NP_005712 Length = 418 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QTAKVGDK 8 ++AKVGD+ Sbjct: 39 ESAKVGDQ 46>NP_006288 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QTAKVGDKT 9 + AK G+KT Sbjct: 34 RAAKAGEKT 42>NP_852468 Length = 140 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTAKVGDKT 9 +TAK+ D+T Sbjct: 38 KTAKIEDET 46>NP_598395 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QTAKVGDKT 9 +TAK+ D+T Sbjct: 38 KTAKIEDET 46>NP_001025226 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QTAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364>NP_001164 Length = 1501 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QTAKVGDKT 9 + AK+ DKT Sbjct: 1355 EAAKIPDKT 1363>NP_001192246 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TAKVGDKT 9 TAK G KT Sbjct: 142 TAKPGSKT 149>NP_006678 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 QTAKVGD 7 +TAK GD Sbjct: 105 ETAKTGD 111>XP_005267693 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QTAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364>XP_005267692 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QTAKVGDKT 9 + AK+ DKT Sbjct: 1356 EAAKIPDKT 1364>NP_892015 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 TAKVGDKT 9 TAK G KT Sbjct: 141 TAKPGSKT 148Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.114 0.290 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 454,673 Number of extensions: 522 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |