Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 19 869 XP_005271621 19 869 XP_006718907 19 869 XP_006718906 19 869 XP_005271619 19 869 XP_005271618 19 869 NP_689991 17 4312 NP_001029097 17 4312 XP_006718022 17 4312 XP_005270165 17 4312 XP_005262957 17 4312 XP_005262955 17 4312 XP_005262954 17 4312 XP_005262953 17 4312 XP_005262950 17 4312 NP_055029 16 5631 NP_060066 16 5631 NP_001239029 16 5631 NP_001239032 16 5631 NP_001239031 16 5631 XP_006715929 16 5631 XP_005250018 16 5631 XP_005250017 16 5631 XP_005250016 16 5631 XP_006715928 16 5631 XP_006715927 16 5631 NP_057002 16 5631 NP_997219 16 5631 NP_001786 16 7355 XP_006722457 16 7355 NP_872317 16 7355 NP_000477 15 9605 NP_001128119 15 9605 NP_940997 15 9605 XP_006713973 15 9605 XP_006713972 15 9605 XP_006713971 15 9605 NP_004937 15 9605>NP_000042 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 675 QSSIGFSV 682>XP_005271621 Length = 2708 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 327 QSSIGFSV 334>XP_006718907 Length = 3050 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 675 QSSIGFSV 682>XP_006718906 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 675 QSSIGFSV 682>XP_005271619 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 675 QSSIGFSV 682>XP_005271618 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QSSIGFSV 8 QSSIGFSV Sbjct: 675 QSSIGFSV 682>NP_689991 Length = 518 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>NP_001029097 Length = 392 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 52 SSVGFSV 58>XP_006718022 Length = 309 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 52 SSVGFSV 58>XP_005270165 Length = 353 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 13 SSVGFSV 19>XP_005262957 Length = 229 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>XP_005262955 Length = 336 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>XP_005262954 Length = 451 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>XP_005262953 Length = 469 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>XP_005262950 Length = 518 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 49 SSVGFSV 55>NP_055029 Length = 288 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SIGFSVR 9 SIGF+VR Sbjct: 119 SIGFAVR 125>NP_060066 Length = 1624 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 + +GFSVR Sbjct: 1176 EDGVGFSVR 1184>NP_001239029 Length = 1637 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 + +GFSVR Sbjct: 1176 EDGVGFSVR 1184>NP_001239032 Length = 1610 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 + +GFSVR Sbjct: 1176 EDGVGFSVR 1184>NP_001239031 Length = 1623 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 + +GFSVR Sbjct: 1176 EDGVGFSVR 1184>XP_006715929 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 9 SSLGFSV 15>XP_005250018 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 9 SSLGFSV 15>XP_005250017 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 9 SSLGFSV 15>XP_005250016 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 9 SSLGFSV 15>XP_006715928 Length = 599 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 50 SSLGFSV 56>XP_006715927 Length = 636 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 50 SSLGFSV 56>NP_057002 Length = 163 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SIGFSVR 9 SIGF+VR Sbjct: 50 SIGFAVR 56>NP_997219 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SSIGFSV 8 SS+GFSV Sbjct: 9 SSLGFSV 15>NP_001786 Length = 784 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIGFSVR 9 SIG+S+R Sbjct: 404 SIGYSIR 410>XP_006722457 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSIGFSVR 9 SS+G SVR Sbjct: 80 SSLGISVR 87>NP_872317 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSIGFSVR 9 SS+G SVR Sbjct: 80 SSLGISVR 87>NP_000477 Length = 271 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SIGFSV 8 SIGFSV Sbjct: 163 SIGFSV 168>NP_001128119 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 QSS GF V+ Sbjct: 39 QSSKGFDVK 47>NP_940997 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 QSS GF V+ Sbjct: 39 QSSKGFDVK 47>XP_006713973 Length = 558 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 QSS GF V+ Sbjct: 60 QSSKGFDVK 68>XP_006713972 Length = 751 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 QSS GF V+ Sbjct: 60 QSSKGFDVK 68>XP_006713971 Length = 835 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSSIGFSVR 9 QSS GF V+ Sbjct: 60 QSSKGFDVK 68>NP_004937 Length = 1830 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IGFSVR 9 IGFS+R Sbjct: 1066 IGFSIR 1071Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.129 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,679 Number of extensions: 414 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |