Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 299 NP_065071 16 5631 NP_076968 16 5631 NP_872363 16 5631 XP_005271570 16 5631 XP_005271569 16 5631 XP_006718878 16 5631 XP_005271568 16 5631 XP_006717988 16 5631 XP_006717987 16 5631 XP_006717986 16 5631 XP_005270044 16 5631 XP_005270045 16 5631 NP_001008781 16 7355 YP_003024036 16 7355 NP_056175 15 9605 NP_001186804 15 9605 NP_008923 15 9605 NP_964013 15 9605 NP_001073918 15 9605 XP_005262121 15 9605 XP_006717743 15 9605 NP_443168 15 9605 NP_001128689 15 9605>NP_115803 Length = 1156 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSRMGINQP 9 QSR GINQP Sbjct: 1071 QSRTGINQP 1079>NP_065071 Length = 1067 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 365 MGMNQP 370>NP_076968 Length = 753 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMGINQP 9 RMG+ QP Sbjct: 492 RMGLTQP 498>NP_872363 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 QS MG+N P Sbjct: 1153 QSPMGMNLP 1161>XP_005271570 Length = 1462 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 QS MG+N P Sbjct: 1116 QSPMGMNLP 1124>XP_005271569 Length = 1462 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 QS MG+N P Sbjct: 1116 QSPMGMNLP 1124>XP_006718878 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 QS MG+N P Sbjct: 1153 QSPMGMNLP 1161>XP_005271568 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 QS MG+N P Sbjct: 1153 QSPMGMNLP 1161>XP_006717988 Length = 986 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 371 MGMNQP 376>XP_006717987 Length = 1073 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 371 MGMNQP 376>XP_006717986 Length = 1073 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 371 MGMNQP 376>XP_005270044 Length = 1073 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 371 MGMNQP 376>XP_005270045 Length = 1073 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 MG+NQP Sbjct: 371 MGMNQP 376>NP_001008781 Length = 4557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QSRMGI 6 QSRMGI Sbjct: 65 QSRMGI 70>YP_003024036 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 MGINQP 9 +GINQP Sbjct: 317 IGINQP 322>NP_056175 Length = 1042 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MGINQP 9 MGIN P Sbjct: 487 MGINMP 492>NP_001186804 Length = 170 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 + R+G+ QP Sbjct: 37 KQRVGVQQP 45>NP_008923 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 +S +GIN P Sbjct: 192 ESTLGINLP 200>NP_964013 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 +S +GIN P Sbjct: 192 ESTLGINLP 200>NP_001073918 Length = 1060 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MGINQP 9 MGIN P Sbjct: 744 MGINHP 749>XP_005262121 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RMGINQ 8 R+GINQ Sbjct: 153 RLGINQ 158>XP_006717743 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 MGINQP 9 MGIN P Sbjct: 774 MGINHP 779>NP_443168 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RMGINQ 8 R+GINQ Sbjct: 230 RLGINQ 235>NP_001128689 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSRMGINQP 9 +S +GIN P Sbjct: 192 ESTLGINLP 200Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.128 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,255 Number of extensions: 579 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |