Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 299 NP_001120965 16 5631 NP_066187 16 5631 NP_001139 16 5631 XP_006714256 16 5631 XP_006714255 16 5631 XP_005263005 16 5631 XP_006714254 16 5631 XP_006714253 16 5631 XP_005263002 16 5631 XP_005262999 16 5631 XP_006714252 16 5631 XP_006714251 16 5631 NP_006083 16 7355 XP_006715700 16 7355 XP_006715699 16 7355 XP_005249632 16 7355 XP_005249631 16 7355 XP_005249630 16 7355 XP_006715698 16 7355 XP_006715697 16 7355 XP_005249629 16 7355 XP_006715696 16 7355 XP_005249625 16 7355 NP_001273886 15 9605 NP_149115 15 9605 NP_001207423 15 9605 NP_001207425 15 9605 NP_542392 15 9605 XP_006719734 15 9605>NP_115803 Length = 1156 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSKVMVNYM 9 QSKVM NYM Sbjct: 506 QSKVMANYM 514>NP_001120965 Length = 1863 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 200 QSKMMVN 206>NP_066187 Length = 1872 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 221 QSKMMVN 227>NP_001139 Length = 3957 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 221 QSKMMVN 227>XP_006714256 Length = 1901 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_006714255 Length = 1970 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_005263005 Length = 2019 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_006714254 Length = 2049 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_006714253 Length = 2069 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_005263002 Length = 4072 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 221 QSKMMVN 227>XP_005262999 Length = 4147 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_006714252 Length = 4153 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>XP_006714251 Length = 4165 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSK+MVN Sbjct: 253 QSKMMVN 259>NP_006083 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_006715700 Length = 765 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_006715699 Length = 779 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_005249632 Length = 841 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_005249631 Length = 869 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_005249630 Length = 925 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_006715698 Length = 937 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_006715697 Length = 952 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_005249629 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_006715696 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>XP_005249625 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QSKVMVN 7 QSKV+VN Sbjct: 116 QSKVVVN 122>NP_001273886 Length = 341 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKVMVNYM 9 +KVMV+Y+ Sbjct: 249 TKVMVDYI 256>NP_149115 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKVMVNYM 9 +KVMV+Y+ Sbjct: 392 TKVMVDYI 399>NP_001207423 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKVMVNYM 9 ++VMV YM Sbjct: 245 ARVMVRYM 252>NP_001207425 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKVMVNYM 9 ++VMV YM Sbjct: 245 ARVMVRYM 252>NP_542392 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKVMVNYM 9 ++VMV YM Sbjct: 276 ARVMVRYM 283>XP_006719734 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKVMVNYM 9 +KVMV+Y+ Sbjct: 319 TKVMVDYI 326Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.121 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 307,144 Number of extensions: 297 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |