Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_065856 17 4312 XP_006722575 17 4312 NP_115786 16 5631 NP_006690 16 7355 NP_008971 16 7355 NP_653333 16 7355 XP_005258523 16 7355 XP_005258522 16 7355 XP_005258520 16 7355 XP_005258521 16 7355 XP_005258519 16 7355 XP_005258518 16 7355 XP_005258516 16 7355 XP_006710365 16 7355 NP_001185498 16 7355 NP_001685 16 7355 NP_114102 15 9605 NP_002263 15 9605 XP_005259182 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QSINDEISV 9 QSI+DEISV Sbjct: 1563 QSIHDEISV 1571>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QSINDEISV 9 QSI+DEISV Sbjct: 1563 QSIHDEISV 1571>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QSINDEISV 9 QSI+DEISV Sbjct: 1563 QSIHDEISV 1571>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QSINDEISV 9 QSI+DEISV Sbjct: 1563 QSIHDEISV 1571>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QSINDEISV 9 QSI+DEISV Sbjct: 1563 QSIHDEISV 1571>NP_065856 Length = 628 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QSINDEISV 9 Q +ND+ISV Sbjct: 175 QFLNDQISV 183>XP_006722575 Length = 672 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QSINDEISV 9 Q +ND+ISV Sbjct: 219 QFLNDQISV 227>NP_115786 Length = 718 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QSINDEISV 9 QS+ DEI V Sbjct: 297 QSLKDEIDV 305>NP_006690 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SINDEISV 9 S+N E+SV Sbjct: 257 SVNSEVSV 264>NP_008971 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 263 INEEISV 269>NP_653333 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 163 INEEISV 169>XP_005258523 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 163 INEEISV 169>XP_005258522 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 163 INEEISV 169>XP_005258520 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 163 INEEISV 169>XP_005258521 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 163 INEEISV 169>XP_005258519 Length = 767 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 174 INEEISV 180>XP_005258518 Length = 777 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 174 INEEISV 180>XP_005258516 Length = 866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 INDEISV 9 IN+EISV Sbjct: 263 INEEISV 269>XP_006710365 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SINDEISV 9 S+N E+SV Sbjct: 257 SVNSEVSV 264>NP_001185498 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SINDEISV 9 S+ND+IS+ Sbjct: 79 SLNDDISL 86>NP_001685 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SINDEISV 9 S+ND+IS+ Sbjct: 79 SLNDDISL 86>NP_114102 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SINDEI 7 SINDE+ Sbjct: 155 SINDEV 160>NP_002263 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SINDEIS 8 S+NDEI+ Sbjct: 264 SLNDEIN 270>XP_005259182 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SINDEI 7 SINDE+ Sbjct: 155 SINDEV 160Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.120 0.277 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 457,064 Number of extensions: 451 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |