Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 509 NP_000170 20 509 NP_001268422 20 509 NP_001268423 20 509 XP_005264328 20 509 NP_001177738 17 2528 NP_068750 17 2528 NP_001360 16 7355 NP_001258875 16 7355 NP_003053 16 7355 NP_067019 16 7355 NP_077006 16 7355 NP_055299 16 7355 XP_005248319 16 7355 XP_006712802 16 7355 XP_006712801 16 7355 XP_006712800 16 7355 NP_597812 16 7355 NP_001177766 15 9605 NP_001128512 15 9605 NP_004073 15 9605 NP_075408 15 9605 NP_001128513 15 9605 NP_001177765 15 9605 NP_065970 15 9605 NP_061485 15 9605 NP_008839 15 9605 NP_000035 15 9605 NP_002863 15 9605 NP_775924 15 9605 XP_006724349 15 9605 XP_005256447 15 9605 XP_006712718 15 9605 XP_005246766 15 9605 XP_006712717 15 9605 NP_005043 15 9605>NP_001268421 Length = 1230 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSAVECI V Sbjct: 918 QSAVECIAV 926>NP_000170 Length = 1360 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSAVECI V Sbjct: 1048 QSAVECIAV 1056>NP_001268422 Length = 1058 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSAVECI V Sbjct: 746 QSAVECIAV 754>NP_001268423 Length = 1058 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSAVECI V Sbjct: 746 QSAVECIAV 754>XP_005264328 Length = 1261 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSAVECI V Sbjct: 949 QSAVECIAV 957>NP_001177738 Length = 672 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QSAVECIVV 9 ++A+EC+VV Sbjct: 340 RTAIECLVV 348>NP_068750 Length = 703 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QSAVECIVV 9 ++A+EC+VV Sbjct: 371 RTAIECLVV 379>NP_001360 Length = 4624 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AVECIV 8 AVECI+ Sbjct: 1037 AVECII 1042>NP_001258875 Length = 1530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSAVECIVV 9 Q+ +CIVV Sbjct: 1136 QNGAQCIVV 1144>NP_003053 Length = 1523 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QSAVECIVV 9 Q+ +CIVV Sbjct: 1129 QNGAQCIVV 1137>NP_067019 Length = 1137 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SAVECIVV 9 SAV+C+++ Sbjct: 613 SAVQCLIL 620>NP_077006 Length = 600 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SAVECIV 8 SAVEC++ Sbjct: 349 SAVECLL 355>NP_055299 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAVECI 7 SAVEC+ Sbjct: 150 SAVECV 155>XP_005248319 Length = 4609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AVECIV 8 AVECI+ Sbjct: 1022 AVECII 1027>XP_006712802 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SAVECIV 8 SAVEC++ Sbjct: 349 SAVECLL 355>XP_006712801 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SAVECIV 8 SAVEC++ Sbjct: 349 SAVECLL 355>XP_006712800 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SAVECIV 8 SAVEC++ Sbjct: 309 SAVECLL 315>NP_597812 Length = 1121 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SAVECIVV 9 SAV+C+++ Sbjct: 613 SAVQCLIL 620>NP_001177766 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 747 QSALDCMSV 755>NP_001128512 Length = 1253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 734 QSALDCMSV 742>NP_004073 Length = 1278 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 754 QSALDCMSV 762>NP_075408 Length = 1144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 620 QSALDCMSV 628>NP_001128513 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 620 QSALDCMSV 628>NP_001177765 Length = 1236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QSAVECIVV 9 QSA++C+ V Sbjct: 717 QSALDCMSV 725>NP_065970 Length = 1657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAVECI 7 SAVEC+ Sbjct: 1554 SAVECL 1559>NP_061485 Length = 211 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9>NP_008839 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9>NP_000035 Length = 920 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 QSAVEC 6 QSA+EC Sbjct: 120 QSALEC 125>NP_002863 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9>NP_775924 Length = 645 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 SAVECIVV 9 +A+ CIV+ Sbjct: 170 TAISCIVI 177>XP_006724349 Length = 161 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9>XP_005256447 Length = 170 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9>XP_006712718 Length = 969 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAVECI 7 SAVEC+ Sbjct: 866 SAVECL 871>XP_005246766 Length = 1656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAVECI 7 SAVEC+ Sbjct: 1553 SAVECL 1558>XP_006712717 Length = 1657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAVECI 7 SAVEC+ Sbjct: 1554 SAVECL 1559>NP_005043 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 AVECIVV 9 A++C+VV Sbjct: 3 AIKCVVV 9Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 516,189 Number of extensions: 422 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |