Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 18 1135 NP_055987 17 3301 XP_005245087 17 3301 XP_005245086 17 3301 XP_005245085 17 3301 XP_005245084 17 3301 XP_006711302 17 3301 XP_005245083 17 3301 XP_005245082 17 3301 XP_005245081 17 3301 XP_005245080 17 3301 XP_005245079 17 3301 XP_005245077 17 3301 XP_005245076 17 3301 XP_006711301 17 3301 XP_005245075 17 3301 XP_005245074 17 3301 XP_005245073 17 3301 XP_005245072 17 3301 NP_002421 16 5631 NP_065190 16 7355 NP_078820 15 9605 NP_056131 15 9605 NP_775899 15 9605 XP_005267542 15 9605 XP_005267541 15 9605 XP_005267544 15 9605>NP_115803 Length = 1156 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QRQQSSISA 9 Q+QQSSISA Sbjct: 618 QQQQSSISA 626Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QRQQSSISA 9 Q+QQSSISA Sbjct: 630 QQQQSSISA 638>NP_055987 Length = 2817 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 449 RRQQSEISA 457>XP_005245087 Length = 2708 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245086 Length = 2714 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245085 Length = 2718 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245084 Length = 2719 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_006711302 Length = 2754 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245083 Length = 2774 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245082 Length = 2779 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245081 Length = 2819 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245080 Length = 2824 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245079 Length = 2838 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245077 Length = 2858 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245076 Length = 2869 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_006711301 Length = 2896 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 449 RRQQSEISA 457>XP_005245075 Length = 2898 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 446 RRQQSEISA 454>XP_005245074 Length = 2898 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>XP_005245073 Length = 2901 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 449 RRQQSEISA 457>XP_005245072 Length = 2903 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 +RQQS ISA Sbjct: 451 RRQQSEISA 459>NP_002421 Length = 1320 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 QRQQSSIS 8 QRQQ SIS Sbjct: 1163 QRQQFSIS 1170>NP_065190 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QRQQSSISA 9 Q+QQSS SA Sbjct: 129 QQQQSSPSA 137>NP_078820 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QRQQSSI 7 QRQ+SS+ Sbjct: 231 QRQESSV 237>NP_056131 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QRQQSSIS 8 +RQQ SIS Sbjct: 164 RRQQQSIS 171>NP_775899 Length = 4462 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RQQSSISA 9 +QQ SISA Sbjct: 1237 KQQKSISA 1244>XP_005267542 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QRQQSSIS 8 +RQQ SIS Sbjct: 161 RRQQQSIS 168>XP_005267541 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QRQQSSIS 8 +RQQ SIS Sbjct: 161 RRQQQSIS 168>XP_005267544 Length = 1158 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QRQQSSIS 8 +RQQ SIS Sbjct: 232 RRQQQSIS 239Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.0973 0.203 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 361,132 Number of extensions: 375 Number of successful extensions: 28 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |