Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 18 1482 NP_005913 18 1482 XP_005267046 18 1482 XP_005267045 18 1482 NP_001185863 17 4312 NP_258261 17 4312 XP_005249527 17 4312 XP_006715303 17 4312 NP_000171 16 7355 NP_000119 16 7355 NP_079106 16 7355 XP_006726609 16 7355 XP_006719787 16 7355 XP_005262880 16 7355 XP_005262879 16 7355 XP_006714200 16 7355 XP_005262878 16 7355 XP_006710027 16 7355>NP_006715 Length = 1558 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QRARIALV 8 QRARIALV Sbjct: 555 QRARIALV 562>NP_005913 Length = 1608 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QRARIALV 8 QRARIALV Sbjct: 555 QRARIALV 562>XP_005267046 Length = 1554 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QRARIALV 8 QRARIALV Sbjct: 555 QRARIALV 562>XP_005267045 Length = 1604 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 QRARIALV 8 QRARIALV Sbjct: 555 QRARIALV 562>NP_001185863 Length = 1492 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QRARIAL 7 QRARIAL Sbjct: 730 QRARIAL 736>NP_258261 Length = 1464 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QRARIAL 7 QRARIAL Sbjct: 702 QRARIAL 708>XP_005249527 Length = 822 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QRARIAL 7 QRARIAL Sbjct: 730 QRARIAL 736>XP_006715303 Length = 1463 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QRARIAL 7 QRARIAL Sbjct: 730 QRARIAL 736>NP_000171 Length = 1103 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ARIALVT 9 AR+ALVT Sbjct: 182 ARVALVT 188>NP_000119 Length = 625 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QRARIALVT 9 Q+A+I LVT Sbjct: 533 QKAKIPLVT 541>NP_079106 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QRARIALVT 9 Q+A++AL+T Sbjct: 42 QKAQVALMT 50>XP_006726609 Length = 2838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RARIALVT 9 R R+ALVT Sbjct: 2452 RCRLALVT 2459>XP_006719787 Length = 2838 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RARIALVT 9 R R+ALVT Sbjct: 2452 RCRLALVT 2459>XP_005262880 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QRARIALVT 9 Q+A+I LVT Sbjct: 444 QKAKIPLVT 452>XP_005262879 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QRARIALVT 9 Q+A+I LVT Sbjct: 502 QKAKIPLVT 510>XP_006714200 Length = 610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QRARIALVT 9 Q+A+I LVT Sbjct: 518 QKAKIPLVT 526>XP_005262878 Length = 626 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QRARIALVT 9 Q+A+I LVT Sbjct: 534 QKAKIPLVT 542>XP_006710027 Length = 2837 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RARIALVT 9 R R+ALVT Sbjct: 2451 RCRLALVT 2458Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.136 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 245,239 Number of extensions: 281 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |