Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001261 21 175 XP_005271924 21 175 XP_005271923 21 175 NP_001191676 17 3301 NP_002904 17 3301 NP_002462 16 5631 NP_000248 16 5631 XP_005267753 16 5631 XP_006720215 16 5631 XP_006720214 16 5631 XP_005267751 16 5631 NP_001005514 16 5631 NP_001264198 16 7355 NP_036553 16 7355 NP_112211 16 7355 NP_056155 16 7355 XP_005267209 16 7355 XP_005265063 16 7355 NP_001005482 16 7355 NP_689491 15 9605 NP_001952 15 9605 NP_115956 15 9605 NP_001239004 15 9605 NP_001239002 15 9605 NP_004776 15 9605 NP_001123484 15 9605 NP_001239005 15 9605 XP_005255760 15 9605 XP_006721044 15 9605 XP_005255759 15 9605 NP_001004759 15 9605>NP_001261 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QQNVRGMRK 9 QQNVRGM+K Sbjct: 340 QQNVRGMKK 348>XP_005271924 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QQNVRGMRK 9 QQNVRGM+K Sbjct: 340 QQNVRGMKK 348>XP_005271923 Length = 1798 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QQNVRGMRK 9 QQNVRGM+K Sbjct: 340 QQNVRGMKK 348>NP_001191676 Length = 1148 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QQNVRGMRK 9 Q+NV+G RK Sbjct: 508 QKNVQGKRK 516>NP_002904 Length = 1147 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QQNVRGMRK 9 Q+NV+G RK Sbjct: 508 QKNVQGKRK 516>NP_002462 Length = 1939 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1837 ESVKGMRK 1844>NP_000248 Length = 1935 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1835 ESVKGMRK 1842>XP_005267753 Length = 1935 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1835 ESVKGMRK 1842>XP_006720215 Length = 1968 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1866 ESVKGMRK 1873>XP_006720214 Length = 1978 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1876 ESVKGMRK 1883>XP_005267751 Length = 1979 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QNVRGMRK 9 ++V+GMRK Sbjct: 1877 ESVKGMRK 1884>NP_001005514 Length = 310 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QQNVRGMRK 9 +++V+GMRK Sbjct: 228 KKSVKGMRK 236>NP_001264198 Length = 2925 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QNVRGMR 8 +NV+GMR Sbjct: 47 RNVKGMR 53>NP_036553 Length = 1914 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QNVRGMRK 9 +N RGM+K Sbjct: 966 KNARGMQK 973>NP_112211 Length = 165 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VRGMRK 9 +RGMRK Sbjct: 151 IRGMRK 156>NP_056155 Length = 903 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QQNVRGMRK 9 Q N++ MRK Sbjct: 151 QSNIKHMRK 159>XP_005267209 Length = 108 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VRGMRK 9 +RGMRK Sbjct: 94 IRGMRK 99>XP_005265063 Length = 903 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QQNVRGMRK 9 Q N++ MRK Sbjct: 151 QSNIKHMRK 159>NP_001005482 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QQNVRGMRK 9 +++VRG+RK Sbjct: 233 KKSVRGVRK 241>NP_689491 Length = 100 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 QNVRGMRK 9 + +RG+RK Sbjct: 74 EEIRGLRK 81>NP_001952 Length = 858 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QQNVRGMR 8 ++N+RG+R Sbjct: 694 EENMRGVR 701>NP_115956 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 QQNVRGMRK 9 ++N+RG+ K Sbjct: 110 KENIRGLDK 118Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 QQNVRGMRK 9 ++N+RG+ K Sbjct: 158 KENIRGLDK 166>NP_001239004 Length = 224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 89 QNVEGLR 95>NP_001239002 Length = 226 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 91 QNVEGLR 97>NP_004776 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 202 QNVEGLR 208>NP_001123484 Length = 337 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 202 QNVEGLR 208>NP_001239005 Length = 215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 91 QNVEGLR 97>XP_005255760 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 67 QNVEGLR 73>XP_006721044 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 67 QNVEGLR 73>XP_005255759 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QNVRGMR 8 QNV G+R Sbjct: 250 QNVEGLR 256>NP_001004759 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NVRGMR 8 NVRG+R Sbjct: 345 NVRGLR 350Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.129 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 435,148 Number of extensions: 632 Number of successful extensions: 32 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |