Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 19 869 NP_733762 19 869 XP_006713860 19 869 XP_006713859 19 869 XP_005247910 19 869 XP_005247909 19 869 NP_037412 18 1135 XP_005273918 18 1135 NP_619542 17 3301 XP_005274600 17 3301 NP_001273560 17 4312 NP_938205 17 4312 NP_037413 17 4312 XP_005260739 17 4312 XP_006719923 17 4312 XP_006719922 17 4312 XP_006719920 17 4312 XP_005266554 17 4312 XP_005266553 17 4312 XP_006719919 17 4312 XP_005266551 17 4312 XP_005266550 17 4312 XP_005266549 17 4312 XP_006719918 17 4312 XP_005266548 17 4312 NP_775752 16 5631 XP_005259550 16 5631 NP_031399 16 7355 NP_001255968 16 7355 NP_004066 15 9605 NP_001155244 15 9605 NP_000860 15 9605 NP_998786 15 9605 NP_065772 15 9605 XP_006724837 15 9605>NP_005179 Length = 906 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 149 RNLTKLSLI 157>NP_733762 Length = 982 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 141 RNLTKLSLI 149>XP_006713860 Length = 914 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 169 RNLTKLSLI 177>XP_006713859 Length = 966 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 169 RNLTKLSLI 177>XP_005247910 Length = 982 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 141 RNLTKLSLI 149>XP_005247909 Length = 1010 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NLTKLSLI Sbjct: 169 RNLTKLSLI 177>NP_037412 Length = 674 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 QNLT+LSL+ Sbjct: 248 QNLTELSLV 256>XP_005273918 Length = 674 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 QNLT+LSL+ Sbjct: 248 QNLTELSLV 256>NP_619542 Length = 1041 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QNLTK++L Sbjct: 87 QNLTKINL 94>XP_005274600 Length = 1059 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QNLTK++L Sbjct: 105 QNLTKINL 112>NP_001273560 Length = 1009 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 664 QNVTKLSV 671>NP_938205 Length = 649 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 NLTKLSLI 9 NLT+LSL+ Sbjct: 226 NLTELSLV 233>NP_037413 Length = 649 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 NLTKLSLI 9 NLT+LSL+ Sbjct: 226 NLTELSLV 233>XP_005260739 Length = 649 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 NLTKLSLI 9 NLT+LSL+ Sbjct: 226 NLTELSLV 233>XP_006719923 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 389 QNVTKLSV 396>XP_006719922 Length = 942 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 677 QNVTKLSV 684>XP_006719920 Length = 999 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 677 QNVTKLSV 684>XP_005266554 Length = 1000 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 677 QNVTKLSV 684>XP_005266553 Length = 1007 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 662 QNVTKLSV 669>XP_006719919 Length = 1009 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 664 QNVTKLSV 671>XP_005266551 Length = 1012 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 667 QNVTKLSV 674>XP_005266550 Length = 1017 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 672 QNVTKLSV 679>XP_005266549 Length = 1019 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 674 QNVTKLSV 681>XP_006719918 Length = 1021 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 676 QNVTKLSV 683>XP_005266548 Length = 1022 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QNLTKLSL 8 QN+TKLS+ Sbjct: 677 QNVTKLSV 684>NP_775752 Length = 679 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LTKLSLI 9 LTKLSLI Sbjct: 331 LTKLSLI 337>XP_005259550 Length = 666 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LTKLSLI 9 LTKLSLI Sbjct: 331 LTKLSLI 337>NP_031399 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NL+KLS++ Sbjct: 212 KNLSKLSML 220>NP_001255968 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QNLTKLSLI 9 +NL+KLS++ Sbjct: 212 KNLSKLSML 220>NP_004066 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NLTKLSL 8 N+TKLS+ Sbjct: 92 NITKLSI 98>NP_001155244 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NLTKLSL 8 N+TKLS+ Sbjct: 89 NITKLSI 95>NP_000860 Length = 484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NLTKLSL 8 N+TKLS+ Sbjct: 110 NITKLSI 116>NP_998786 Length = 516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NLTKLSL 8 N+TKLS+ Sbjct: 110 NITKLSI 116>NP_065772 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLTKLSLI 9 NLTK+S + Sbjct: 1531 NLTKISYV 1538>XP_006724837 Length = 1533 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NLTKLSLI 9 NLTK+S + Sbjct: 1355 NLTKISYV 1362Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.131 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 290,035 Number of extensions: 331 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |