Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1482 XP_005262424 18 1482 NP_001192049 16 5631 NP_001192048 16 5631 NP_001136145 16 5631 NP_001192051 16 5631 NP_001192050 16 5631 NP_055556 16 5631 XP_005253325 16 5631 XP_006718459 16 5631 XP_005253323 16 5631 XP_006718458 16 5631 XP_005253322 16 5631 XP_005253320 16 5631 XP_006718457 16 5631 XP_005253319 16 5631 NP_001258596 16 7355 NP_898861 16 7355 NP_001258597 16 7355 NP_115498 16 7355 NP_001258598 16 7355 XP_006715290 16 7355 XP_006715289 16 7355 XP_005249504 16 7355 NP_775099 15 9605 NP_056472 15 9605>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMSSLSVNV 9 QMSSL VNV Sbjct: 1512 QMSSLPVNV 1520>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMSSLSVNV 9 QMSSL VNV Sbjct: 1307 QMSSLPVNV 1315>NP_001192049 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 475 QLSSLSIDI 483>NP_001192048 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>NP_001136145 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 475 QLSSLSIDI 483>NP_001192051 Length = 401 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 359 QLSSLSIDI 367>NP_001192050 Length = 480 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 438 QLSSLSIDI 446>NP_055556 Length = 480 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 438 QLSSLSIDI 446>XP_005253325 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_006718459 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_005253323 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_006718458 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_005253322 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_005253320 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_006718457 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>XP_005253319 Length = 550 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QMSSLSVNV 9 Q+SSLS+++ Sbjct: 508 QLSSLSIDI 516>NP_001258596 Length = 270 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 147 MSSMEVNV 154>NP_898861 Length = 303 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 228 MSSMEVNV 235>NP_001258597 Length = 334 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 211 MSSMEVNV 218>NP_115498 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 228 MSSMEVNV 235>NP_001258598 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 193 MSSMEVNV 200>XP_006715290 Length = 249 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 126 MSSMEVNV 133>XP_006715289 Length = 249 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 126 MSSMEVNV 133>XP_005249504 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MSSLSVNV 9 MSS+ VNV Sbjct: 215 MSSMEVNV 222>NP_775099 Length = 2595 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSSLSVNV 9 +SSL+VN+ Sbjct: 914 LSSLTVNI 921>NP_056472 Length = 2277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MSSLSVNV 9 +SSL+VN+ Sbjct: 596 LSSLTVNI 603Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.108 0.232 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 243,024 Number of extensions: 185 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |