Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 509 XP_006716142 20 509 XP_005250088 20 509 XP_006716141 20 509 XP_005250085 20 509 XP_006716140 20 509 XP_005250084 20 509 XP_005250083 20 509 XP_005250082 20 509 NP_073741 16 5631 NP_067048 16 5631 NP_000208 16 7355 NP_003292 16 7355 XP_006722199 16 7355 XP_005257785 16 7355 NP_001138424 16 7355 NP_115510 16 7355 NP_065100 15 9605 NP_001273450 15 9605 NP_001273451 15 9605 XP_005253767 15 9605 XP_005253768 15 9605 XP_006715167 15 9605>NP_733751 Length = 4911 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1937 QMNETTANR 1945>XP_006716142 Length = 4927 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_005250088 Length = 4928 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_006716141 Length = 4959 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_005250085 Length = 4979 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_006716140 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_005250084 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>XP_005250083 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1953 QMNETTANR 1961>XP_005250082 Length = 4983 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMNVTTANR 9 QMN TTANR Sbjct: 1954 QMNETTANR 1962>NP_073741 Length = 912 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NVTTANR 9 +VTTANR Sbjct: 60 HVTTANR 66>NP_067048 Length = 248 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QMNVTTAN 8 Q+N+TTA+ Sbjct: 143 QINITTAD 150>NP_000208 Length = 495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QMNVTTAN 8 Q+N+ TAN Sbjct: 470 QVNIRTAN 477>NP_003292 Length = 398 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MNVTTANR 9 +NV T+NR Sbjct: 245 LNVNTSNR 252>XP_006722199 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QMNVTTAN 8 ++N+TT+N Sbjct: 196 KLNITTSN 203>XP_005257785 Length = 1887 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QMNVTTAN 8 ++N+TT+N Sbjct: 1442 KLNITTSN 1449>NP_001138424 Length = 2172 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QMNVTTAN 8 ++N TTAN Sbjct: 1339 RLNTTTAN 1346>NP_115510 Length = 1663 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QMNVTTAN 8 ++N+TT+N Sbjct: 1276 KLNITTSN 1283>NP_065100 Length = 338 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMNVTTANR 9 QMN+TT + Sbjct: 93 QMNLTTGKQ 101>NP_001273450 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMNVTTANR 9 QMN+TT + Sbjct: 12 QMNLTTGKQ 20>NP_001273451 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMNVTTANR 9 QMN+TT + Sbjct: 12 QMNLTTGKQ 20>XP_005253767 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMNVTTANR 9 QMN+TT + Sbjct: 86 QMNLTTGKQ 94>XP_005253768 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMNVTTANR 9 QMN+TT + Sbjct: 86 QMNLTTGKQ 94>XP_006715167 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QMNVTTAN 8 +MN+TT++ Sbjct: 261 EMNITTSS 268Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.108 0.275 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 270,279 Number of extensions: 337 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |