Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 20 299 NP_001091680 20 299 NP_001091679 20 299 XP_006713048 20 299 XP_006713047 20 299 XP_006713046 20 299 XP_005264943 20 299 NP_075252 19 869 NP_998812 19 869 NP_002002 19 869 XP_005265895 19 869 XP_005265894 19 869 NP_005088 16 5631 NP_001274103 16 5631 NP_000343 16 5631 NP_001013725 16 5631 XP_005254450 16 5631 XP_005254449 16 5631 XP_006718349 16 5631 XP_006717822 16 5631 NP_149055 16 7355 XP_005246793 16 7355 XP_005246792 16 7355 XP_005246791 16 7355 XP_005246790 16 7355 XP_005246789 16 7355 NP_060764 15 9605 NP_054644 15 9605 NP_000784 15 9605 NP_001007024 15 9605 NP_001258563 15 9605 NP_001229431 15 9605 NP_005435 15 9605 NP_001258564 15 9605 NP_001229432 15 9605 XP_005268698 15 9605 XP_006712895 15 9605 XP_005247000 15 9605 XP_005246999 15 9605 NP_001004134 15 9605>NP_001895 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 130 QMLKHAVVN 138>NP_001091680 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 130 QMLKHAVVN 138>NP_001091679 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 130 QMLKHAVVN 138>XP_006713048 Length = 720 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 130 QMLKHAVVN 138>XP_006713047 Length = 774 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 123 QMLKHAVVN 131>XP_006713046 Length = 774 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 123 QMLKHAVVN 131>XP_005264943 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 QMLKH VVN Sbjct: 130 QMLKHAVVN 138>NP_075252 Length = 762 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q LKH+V+N Sbjct: 282 QWLKHIVIN 290>NP_998812 Length = 802 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q LKH+V+N Sbjct: 282 QWLKHIVIN 290>NP_002002 Length = 802 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q LKH+V+N Sbjct: 282 QWLKHIVIN 290>XP_005265895 Length = 802 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q LKH+V+N Sbjct: 282 QWLKHIVIN 290>XP_005265894 Length = 834 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q LKH+V+N Sbjct: 314 QWLKHIVIN 322>NP_005088 Length = 557 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QMLKHVVVN 9 Q+ KHV+V+ Sbjct: 546 QIYKHVIVD 554>NP_001274103 Length = 1582 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QMLKHVVV 8 Q+LKH+V+ Sbjct: 1020 QLLKHMVL 1027>NP_000343 Length = 1581 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QMLKHVVV 8 Q+LKH+V+ Sbjct: 1019 QLLKHMVL 1026>NP_001013725 Length = 1649 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMLKHVVVN 9 Q+LKH +N Sbjct: 532 QLLKHSFIN 540>XP_005254450 Length = 1505 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMLKHVVVN 9 Q+LKH +N Sbjct: 532 QLLKHSFIN 540>XP_005254449 Length = 1626 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMLKHVVVN 9 Q+LKH +N Sbjct: 532 QLLKHSFIN 540>XP_006718349 Length = 1646 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QMLKHVVV 8 Q+LKH+V+ Sbjct: 1019 QLLKHMVL 1026>XP_006717822 Length = 810 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QMLKHVVVN 9 Q +KH +VN Sbjct: 777 QFVKHQIVN 785>NP_149055 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 593 QFFDHVIVN 601>XP_005246793 Length = 562 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 518 QFFDHVIVN 526>XP_005246792 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 535 QFFDHVIVN 543>XP_005246791 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 549 QFFDHVIVN 557>XP_005246790 Length = 602 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 558 QFFDHVIVN 566>XP_005246789 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 QMLKHVVVN 9 Q HV+VN Sbjct: 569 QFFDHVIVN 577>NP_060764 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KHVVVN 9 KH+VVN Sbjct: 339 KHLVVN 344>NP_054644 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MLKHVVV 8 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_000784 Length = 273 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MLKHVVV 8 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_001007024 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MLKHVVV 8 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_001258563 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 259 RLLKHVV 265>NP_001229431 Length = 146 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MLKHVVV 8 +LKHVV+ Sbjct: 33 LLKHVVL 39>NP_005435 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 227 RLLKHVV 233>NP_001258564 Length = 258 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 227 RLLKHVV 233>NP_001229432 Length = 110 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MLKHVVV 8 +LKHVV+ Sbjct: 33 LLKHVVL 39>XP_005268698 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QMLKHVVV 8 QML H+VV Sbjct: 85 QMLIHLVV 92>XP_006712895 Length = 246 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 174 RLLKHVV 180>XP_005247000 Length = 260 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 229 RLLKHVV 235>XP_005246999 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QMLKHVV 7 ++LKHVV Sbjct: 229 RLLKHVV 235>NP_001004134 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QMLKHVVV 8 QML H+VV Sbjct: 81 QMLIHLVV 88Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 517,038 Number of extensions: 683 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |