Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 18 1135 XP_005248577 18 1135 XP_005248576 18 1135 NP_005036 17 2528 NP_774959 17 2528 NP_001264671 17 2528 NP_063938 17 2528 XP_005264490 17 2528 NP_005948 16 5631 NP_001107644 16 5631 NP_003620 16 5631 XP_005271347 16 5631 XP_005263520 16 5631 XP_005263519 16 5631 XP_005263518 16 5631 XP_005263517 16 5631 XP_005263515 16 5631 NP_001121619 16 7355 NP_001171809 16 7355 NP_001098713 16 7355 NP_065817 16 7355 NP_000258 16 7355 NP_001035957 16 7355 XP_006721991 16 7355 XP_006721990 16 7355 XP_006721989 16 7355 XP_005258041 16 7355 XP_006721988 16 7355 XP_006721987 16 7355 XP_006721986 16 7355 XP_005258040 16 7355 XP_006721985 16 7355 NP_056510 15 9605 XP_006715123 15 9605 XP_005249068 15 9605 XP_005249067 15 9605 NP_839943 15 9605>NP_005912 Length = 1512 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL VEDTLD Sbjct: 870 QLGVEDTLD 878>XP_005248577 Length = 1349 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL VEDTLD Sbjct: 707 QLGVEDTLD 715>XP_005248576 Length = 1375 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL VEDTLD Sbjct: 733 QLGVEDTLD 741>NP_005036 Length = 3460 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 QLVVEDTLD 9 Q+V+ED+LD Sbjct: 357 QVVLEDSLD 365>NP_774959 Length = 3458 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 QLVVEDTLD 9 Q+V+ED+LD Sbjct: 357 QVVLEDSLD 365>NP_001264671 Length = 437 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLVVEDTL 8 QLV++DTL Sbjct: 87 QLVIQDTL 94>NP_063938 Length = 512 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLVVEDTL 8 QLV++DTL Sbjct: 162 QLVIQDTL 169>XP_005264490 Length = 454 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLVVEDTL 8 QLV++DTL Sbjct: 104 QLVIQDTL 111>NP_005948 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 635 VVEDTLE 641>NP_001107644 Length = 461 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLVVEDTLD 9 QLV ED +D Sbjct: 167 QLVKEDNID 175>NP_003620 Length = 461 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLVVEDTLD 9 QLV ED +D Sbjct: 167 QLVKEDNID 175>XP_005271347 Length = 478 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLVVEDTLD 9 QLV ED +D Sbjct: 184 QLVKEDNID 192>XP_005263520 Length = 574 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 553 VVEDTLE 559>XP_005263519 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 635 VVEDTLE 641>XP_005263518 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 635 VVEDTLE 641>XP_005263517 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 635 VVEDTLE 641>XP_005263515 Length = 697 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VVEDTLD 9 VVEDTL+ Sbjct: 676 VVEDTLE 682>NP_001121619 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>NP_001171809 Length = 1148 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 +LVVE +LD Sbjct: 189 ELVVEKSLD 197>NP_001098713 Length = 1101 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 +LVVE +LD Sbjct: 189 ELVVEKSLD 197>NP_065817 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 +LVVE +LD Sbjct: 189 ELVVEKSLD 197>NP_000258 Length = 2818 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>NP_001035957 Length = 2839 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721991 Length = 1632 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721990 Length = 2823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721989 Length = 2823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_005258041 Length = 2836 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721988 Length = 2846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721987 Length = 2849 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721986 Length = 2854 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 70 QLIILDTLE 78>XP_005258040 Length = 2857 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>XP_006721985 Length = 2867 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLVVEDTLD 9 QL++ DTL+ Sbjct: 83 QLIILDTLE 91>NP_056510 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVVEDTLD 9 L VEDT+D Sbjct: 1156 LGVEDTVD 1163>XP_006715123 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVVEDTLD 9 L VEDT+D Sbjct: 523 LGVEDTVD 530>XP_005249068 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVVEDTLD 9 L VEDT+D Sbjct: 1156 LGVEDTVD 1163>XP_005249067 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVVEDTLD 9 L VEDT+D Sbjct: 1156 LGVEDTVD 1163>NP_839943 Length = 1631 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVEDTL 8 VVEDTL Sbjct: 222 VVEDTL 227Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.136 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 478,968 Number of extensions: 530 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |