Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_009057 17 4312 NP_001177957 16 5631 NP_036602 16 5631 XP_006715974 16 5631 NP_060656 16 7355 XP_005245376 16 7355 XP_005245374 16 7355 NP_001275743 15 9605 NP_076996 15 9605 NP_115826 15 9605 XP_006716699 15 9605 XP_006716698 15 9605 XP_006716697 15 9605 XP_006716696 15 9605 XP_006716695 15 9605 XP_006716694 15 9605 XP_006716693 15 9605 XP_006716692 15 9605 XP_006716691 15 9605 XP_006716690 15 9605 XP_006716689 15 9605 XP_006714561 15 9605>NP_009057 Length = 806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 QLVSQLLTI 9 ++VSQLLT+ Sbjct: 323 RIVSQLLTL 331>NP_001177957 Length = 859 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QLVSQLL 7 QLVSQLL Sbjct: 768 QLVSQLL 774>NP_036602 Length = 923 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QLVSQLL 7 QLVSQLL Sbjct: 832 QLVSQLL 838>XP_006715974 Length = 875 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 QLVSQLL 7 QLVSQLL Sbjct: 784 QLVSQLL 790>NP_060656 Length = 853 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LVSQLLT 8 L+SQLLT Sbjct: 313 LISQLLT 319>XP_005245376 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LVSQLLT 8 L+SQLLT Sbjct: 178 LISQLLT 184>XP_005245374 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LVSQLLT 8 L+SQLLT Sbjct: 371 LISQLLT 377>NP_001275743 Length = 1632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1041 QLISLLLTM 1049>NP_076996 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLVSQLLT 8 +L+SQ+LT Sbjct: 294 KLISQMLT 301>NP_115826 Length = 1641 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006716699 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1041 QLISLLLTM 1049>XP_006716698 Length = 1481 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006716697 Length = 1578 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006716696 Length = 1585 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 982 QLISLLLTM 990>XP_006716695 Length = 1585 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 982 QLISLLLTM 990>XP_006716694 Length = 1632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1041 QLISLLLTM 1049>XP_006716693 Length = 1644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1041 QLISLLLTM 1049>XP_006716692 Length = 1644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1041 QLISLLLTM 1049>XP_006716691 Length = 1653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006716690 Length = 1653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006716689 Length = 1653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLVSQLLTI 9 QL+S LLT+ Sbjct: 1050 QLISLLLTM 1058>XP_006714561 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLVSQLLT 8 +L+SQ+LT Sbjct: 294 KLISQMLT 301Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.138 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 273,794 Number of extensions: 262 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |