Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443179 18 1935 XP_005266703 18 1935 NP_001128669 17 4312 XP_005265157 17 4312 XP_005265156 17 4312 XP_006713187 17 4312 NP_835467 17 4312 NP_067681 16 7355 NP_004531 16 7355 NP_009185 16 7355 XP_006724071 16 7355 XP_006724070 16 7355 NP_004360 15 9605 NP_476508 15 9605 NP_476507 15 9605 NP_001155000 15 9605 NP_892030 15 9605 XP_006725244 15 9605 XP_006725241 15 9605 XP_006725240 15 9605 XP_006720456 15 9605 XP_005254219 15 9605 XP_005246123 15 9605 XP_005246122 15 9605 XP_003846701 15 9605>NP_443179 Length = 2170 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 Q SIGKSKV Sbjct: 2142 QPSIGKSKV 2150>XP_005266703 Length = 1501 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 Q SIGKSKV Sbjct: 1473 QPSIGKSKV 1481>NP_001128669 Length = 594 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGKSK 8 LS+GKSK Sbjct: 107 LSVGKSK 113>XP_005265157 Length = 577 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGKSK 8 LS+GKSK Sbjct: 90 LSVGKSK 96>XP_005265156 Length = 594 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGKSK 8 LS+GKSK Sbjct: 107 LSVGKSK 113>XP_006713187 Length = 594 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGKSK 8 LS+GKSK Sbjct: 107 LSVGKSK 113>NP_835467 Length = 594 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGKSK 8 LS+GKSK Sbjct: 107 LSVGKSK 113>NP_067681 Length = 235 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIGKSKV 9 + IGKSK+ Sbjct: 1 MGIGKSKI 8>NP_004531 Length = 837 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 31 ELSVGESK 38>NP_009185 Length = 521 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 Q+SIG+ K+ Sbjct: 219 QMSIGRGKL 227>XP_006724071 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 31 ELSVGESK 38>XP_006724070 Length = 727 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 31 ELSVGESK 38>NP_004360 Length = 3177 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 +L+IG SKV Sbjct: 1465 RLNIGPSKV 1473>NP_476508 Length = 2971 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 +L+IG SKV Sbjct: 1259 RLNIGPSKV 1267>NP_476507 Length = 2570 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 +L+IG SKV Sbjct: 858 RLNIGPSKV 866>NP_001155000 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSIGKSKV 9 LS+GK+K+ Sbjct: 262 LSLGKNKL 269>NP_892030 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 141 RLSVGQSK 148>XP_006725244 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 123 RLSVGQSK 130>XP_006725241 Length = 404 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 123 RLSVGQSK 130>XP_006725240 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 141 RLSVGQSK 148>XP_006720456 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 141 RLSVGQSK 148>XP_005254219 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QLSIGKSK 8 +LS+G+SK Sbjct: 141 RLSVGQSK 148>XP_005246123 Length = 2770 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 +L+IG SKV Sbjct: 1058 RLNIGPSKV 1066>XP_005246122 Length = 2977 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLSIGKSKV 9 +L+IG SKV Sbjct: 1265 RLNIGPSKV 1273>XP_003846701 Length = 143 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QLSIGKSK 8 QLS+GK + Sbjct: 131 QLSVGKKQ 138Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.305 0.124 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 410,212 Number of extensions: 397 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |