Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 20 509 NP_000242 20 509 XP_005264389 20 509 NP_060918 19 665 NP_001182121 16 5631 NP_689560 16 5631 NP_835223 16 5631 NP_036430 16 5631 NP_001185942 16 5631 NP_001185941 16 5631 NP_001185943 16 5631 XP_005246085 16 5631 XP_005246084 16 5631 XP_006711089 16 5631 XP_006711088 16 5631 NP_001155971 16 5631 NP_001093869 16 7355 NP_612504 16 7355 NP_001093870 16 7355 NP_065776 16 7355 XP_006715966 16 7355 XP_005250277 16 7355 XP_006715965 16 7355 XP_005250276 16 7355 XP_006715964 16 7355 XP_006715963 16 7355 XP_005262709 16 7355 NP_055020 16 7355 NP_057129 15 9605 NP_113628 15 9605>NP_001245210 Length = 868 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLPNVIKAL 9 QLPNVI+AL Sbjct: 347 QLPNVIQAL 355>NP_000242 Length = 934 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLPNVIKAL 9 QLPNVI+AL Sbjct: 413 QLPNVIQAL 421>XP_005264389 Length = 921 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLPNVIKAL 9 QLPNVI+AL Sbjct: 413 QLPNVIQAL 421>NP_060918 Length = 1230 Score = 19.2 bits (38), Expect = 665 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 QLPNVIKAL 9 Q+PN++KAL Sbjct: 431 QVPNIVKAL 439>NP_001182121 Length = 784 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LPNVIKAL 9 LP VIKA+ Sbjct: 433 LPGVIKAI 440>NP_689560 Length = 973 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LPNVIKAL 9 LP VIKA+ Sbjct: 529 LPGVIKAI 536>NP_835223 Length = 287 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 88 QLPSFMKAL 96>NP_036430 Length = 1119 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 Q+P V+KAL Sbjct: 340 QVPLVVKAL 348>NP_001185942 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 135 QLPSFMKAL 143>NP_001185941 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 135 QLPSFMKAL 143>NP_001185943 Length = 242 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 43 QLPSFMKAL 51>XP_005246085 Length = 242 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 43 QLPSFMKAL 51>XP_005246084 Length = 287 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 88 QLPSFMKAL 96>XP_006711089 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 101 QLPSFMKAL 109>XP_006711088 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 QLP+ +KAL Sbjct: 135 QLPSFMKAL 143>NP_001155971 Length = 1236 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLPNVIKAL 9 Q+P V+KAL Sbjct: 433 QVPLVVKAL 441>NP_001093869 Length = 1337 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PNVIKAL 9 PN +KAL Sbjct: 496 PNAVKAL 502>NP_612504 Length = 738 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 79 KIPNLVKA 86>NP_001093870 Length = 600 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PNVIKAL 9 PN +KAL Sbjct: 496 PNAVKAL 502>NP_065776 Length = 861 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715966 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005250277 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715965 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005250276 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715964 Length = 964 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715963 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 QLPNVIKA 8 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005262709 Length = 1337 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 PNVIKAL 9 PN +KAL Sbjct: 496 PNAVKAL 502>NP_055020 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLPNVIKA 8 QLPNV+ A Sbjct: 214 QLPNVLFA 221>NP_057129 Length = 194 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LPNVIKAL 9 LP+++K+L Sbjct: 61 LPSIVKSL 68>NP_113628 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LPNVIK 7 LPNV+K Sbjct: 34 LPNVLK 39Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.139 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 704,604 Number of extensions: 935 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |